Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0136 ATGGTGAACTACTTTGTACAGGAGTTCAAGAGGAAGaacaaagtggaaattagaGGGAACCCAAGAGCCCTGAGGAGGTTGAGAAGTGCATGTGAGAGGGCAAAAAGGACACTCTCATACGCTGTTTCTACCATCATTGAGGTGGATGCTTTATTTCAGGGCATTGACTTGTGCTCTTCAATCACTCGTGCAAAATTTGAGGAAATCAATATGGAGCTCTTTGAAGAGTGTATGGAGACAGTAGATAGGTGTCTTACTGATGCTAAGATGGACAAGGGCAGTGTACATGATGTTGTCCTCGTTGGTGGCTCTTCTAGGATTCCCAAAGTGCAGCAGCTATTGCAGGACTTCTTTGAGGGAAAGGATCTGTGCAAGAGCATCAACCCCGACGAGGCTGTTGCTTATGGTGCGGCTATTCAGGCTGCTTTGTTGAGTGAAGGCATTAAGAATGTTCCAAACTTAGTGCTGTTGGATGTTACGCCACTGTCTCTTGGTGTATCGGTAAAAGGAGATCTCATGAGTGTGGTGATTCCTAGAAATACTCCCATTCCGGTAAAGAGGACCAAAGAATTCTTTACAGATGAAGATAACCAATCCTCTGTCCTGATTAAGGTTTATGAGGGTGAGAGAACAAGAGCCAGTGATAACAATTTATTGGGTTTTTTTAGGCTTTCTGGCTTTCCTCCAGCTCCCCGTGGCCATCCTGTTGATGTGTGTTTTGCCATAGATCAAAATGGTATCCTATCTGTTTCTGCTGAGGAAAAAACCACTGGCAATAAGAACCAGATTACCATAACTAATGACAAAGAAAGACTGTCAGCAGAACAAATTAGAAGAATGATTCAAGAAGCAGAGAAATACCAAGCTGAAGATCAGAAATTCCTTAGGAAGGCCAAAGCAAGGAATGCTTTGGATGATTACCTTTACAAGATGAGGAATACTTCGAAGAACAAGAATATCAGTTCACAAGAAAGTAAGAAGGTTAGTTCTGCAATTACTAAGGCTACAAAATTGCTTGATGGTGATAACCAGCAGGATGAAATAGAGGTGTTTGAGGATTATCTAAAGGAGCTTGTGAGCCTCTTTGATCATATCATGGGAAAGAGTCGTTAG 1113 0.4169 MVNYFVQEFKRKNKVEIRGNPRALRRLRSACERAKRTLSYAVSTIIEVDALFQGIDLCSSITRAKFEEINMELFEECMETVDRCLTDAKMDKGSVHDVVLVGGSSRIPKVQQLLQDFFEGKDLCKSINPDEAVAYGAAIQAALLSEGIKNVPNLVLLDVTPLSLGVSVKGDLMSVVIPRNTPIPVKRTKEFFTDEDNQSSVLIKVYEGERTRASDNNLLGFFRLSGFPPAPRGHPVDVCFAIDQNGILSVSAEEKTTGNKNQITITNDKERLSAEQIRRMIQEAEKYQAEDQKFLRKAKARNALDDYLYKMRNTSKNKNISSQESKKVSSAITKATKLLDGDNQQDEIEVFEDYLKELVSLFDHIMGKSR 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0136 370 Gene3D Actin; Chain A, domain 4 1 76 - -
Ssu3g0136 370 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 150 305 IPR029047 -
Ssu3g0136 370 PRINTS 70kDa heat shock protein signature 95 111 - -
Ssu3g0136 370 PRINTS 70kDa heat shock protein signature 233 249 - -
Ssu3g0136 370 PRINTS 70kDa heat shock protein signature 127 147 - -
Ssu3g0136 370 PRINTS 70kDa heat shock protein signature 153 172 - -
Ssu3g0136 370 SUPERFAMILY Actin-like ATPase domain 1 144 IPR043129 -
Ssu3g0136 370 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 149 301 IPR029047 -
Ssu3g0136 370 ProSitePatterns Heat shock hsp70 proteins family signature 3. 98 112 IPR018181 -
Ssu3g0136 370 Gene3D - 302 369 IPR029048 -
Ssu3g0136 370 Gene3D - 77 124 - -
Ssu3g0136 370 Gene3D - 125 142 - -
Ssu3g0136 370 PANTHER HEAT SHOCK 70 KDA PROTEIN 1 369 - -
Ssu3g0136 370 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 300 368 IPR029048 -
Ssu3g0136 370 PANTHER HEAT SHOCK PROTEIN 70KDA 1 369 IPR013126 GO:0005524|GO:0140662
Ssu3g0136 370 Pfam Hsp70 protein 1 366 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0136 Ssu-Chr3 2608709 2609821 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0136 1 368 Calmodulin-binding Proteins AT3G12580 65.508 8.12e-172 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0136 K03283 - gmx:102667572 572.007