Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0133 ATGGTGAACTACTTTGTACAGGAGTTCAAGAGGAAGAACAAAGTGGACATTAGTGGGAACCCAAAAGCCCTGAGGAGGTTGAGAAATGCATGTGAGAGGACAAAAAGAACACTCTCGTACATTGTTTCTACCGACATTGAGGTAGATGCTTTATTTCAGGGCATTGACTTCTGTTCTTCAATCACTCGTGCAAAGTTTGAGGAAATCAACATGGAGCTCTTTGAAGAGTGTATGGAGACAGTAGACAGGTGTCTTACTGATGCTAAGATGGACAAGAGCAGTGTGCATGATGTTGTCCTTGTTGGTGGTTCTTCTAGGATTCCGAAAGTGCAGCAGCTATTGCAGGACTTCTTTGAGGGAAAGGATCTGTGCAAGAGCATCAACCCCGACGAGGCTGTTGCTTACGGTGCAGCTGTGCAGGCTGCTTTGTTGAGTGAAGGCATTAAGAATGTTCCAAACTTGAAGCTGTTGGATGTTACACCGCTGACTCTTGGTACGGATATAGTAGGAGATATCATGAGTGTAATGATTCCTAGGAATACTACTATTCCGGTAAAGAGAACCGAAAAATTCGTTACAGATAACGATAACCAATCCTCTGCCTTCATTGGGGTTTATGAGGGTGAGAGAACGAGAGTCACTGATAACAACTTGCTGGGTTCTTTTACCCTGTCTGGCCTTCCTCCAGCTCCTCGTTACCATCCTTTTAATGTGTGCTTTGCCATAGACGAAAATGGTATACTATTTGTTTCTGCTGAGGAAAAAACCACTGGCAGTAAGAACGAGATTACCATAACCAATGATAAGGAAAGACTGTCaaccaaagaaattaaaagaatgatTCAAGAAGCTGAGTATTACCAGGCTGAAGATAGGAAGTTCATTAGGAAGGCCAAAGCAATGAATGATTTGGATTATCATGTTTACAAGATCGGGAATGCTTTAAAGAAGAAGGATATCAGAGCAAAGATTTGCTCACAAGAAAAGGAGGATATCGGTTCTGCAATTACTAGGACCTCAGTTTTGCTTGATGGTAAGAACCAGCAGGATGATATAGTTGTGTTTGAGGATCATCTGAAAGAGCTTGTGAGCATCATTGAACGCTTCAAGGCGATGGGCAAAATTGATTAG 1131 0.4173 MVNYFVQEFKRKNKVDISGNPKALRRLRNACERTKRTLSYIVSTDIEVDALFQGIDFCSSITRAKFEEINMELFEECMETVDRCLTDAKMDKSSVHDVVLVGGSSRIPKVQQLLQDFFEGKDLCKSINPDEAVAYGAAVQAALLSEGIKNVPNLKLLDVTPLTLGTDIVGDIMSVMIPRNTTIPVKRTEKFVTDNDNQSSAFIGVYEGERTRVTDNNLLGSFTLSGLPPAPRYHPFNVCFAIDENGILFVSAEEKTTGSKNEITITNDKERLSTKEIKRMIQEAEYYQAEDRKFIRKAKAMNDLDYHVYKIGNALKKKDIRAKICSQEKEDIGSAITRTSVLLDGKNQQDDIVVFEDHLKELVSIIERFKAMGKID 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0133 376 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 150 305 IPR029047 -
Ssu3g0133 376 Gene3D - 302 372 IPR029048 -
Ssu3g0133 376 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 149 301 IPR029047 -
Ssu3g0133 376 Gene3D - 125 142 - -
Ssu3g0133 376 PANTHER HEAT SHOCK PROTEIN 70KDA 1 371 IPR013126 GO:0005524|GO:0140662
Ssu3g0133 376 PANTHER HEAT SHOCK 70 KDA PROTEIN 1 371 - -
Ssu3g0133 376 Gene3D - 77 124 - -
Ssu3g0133 376 Gene3D Actin; Chain A, domain 4 1 76 - -
Ssu3g0133 376 SUPERFAMILY Actin-like ATPase domain 1 144 IPR043129 -
Ssu3g0133 376 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 300 367 IPR029048 -
Ssu3g0133 376 Pfam Hsp70 protein 1 367 IPR013126 GO:0005524|GO:0140662
Ssu3g0133 376 ProSitePatterns Heat shock hsp70 proteins family signature 3. 98 112 IPR018181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0133 Ssu-Chr3 2529188 2530318 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0133 1 365 Calmodulin-binding Proteins AT3G12580 63.760 1.03e-160 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0133 K03283 - gmx:102667578 598.586