Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0130 ATGGCAGACGCCGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGGCTGGATTTGCTGGAGATGATGCCCCGCGTGCTGTGTTTCCCAGCATTGTAGGTCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGTCAAAAAGATGCATATGTTGGTGATGAGGCACAGTCTAAGAGGGGCATTTTGACTCTCAAGTACCCCATTGAACATGGAATTGTGAGCAATTGGGATGATATGGAAAAGATTTGGCATCATACCTTCTACAATGAGCTTCGTGTTGCCCCAGAAGAGCATCCAGTTCTGTTAACTGAGGCTCCTCTTAACCCCAAGGCTAACCGTGAGAAGATGACCCAAATCATGTTTGAGACTTTTAACACCCCTGCTATGTATGTAGCCATCCAGGCTGTTCTTTCACTGTATGCAAGTGGTCGTACAACTGGTATTGTTTTGGATTCTGGTGATGGTGTCAGCCACACTGTCCCTATCTATGAGGGTTATGCCCTCCCACATGCCATCCTTCGTCTTGATCTGGCTGGTCGTGACCTCACTGATTTCTTGATGAAAATTTTGACTGAGCGTGGGTATTCTTTCACCACCTCTGCAGAGCGGGAAATTGTAAGGGATGTGAAAGAAAAGCTGTCTTACATTGCCCTTGACTATGAGCAAGAAATTGAGACAGCCAGGACCAGCTCGTCTGTGGAGAAGAGCTACGAGCTGCCTGATGGGCAGGTCATCACTATCGGCGATGAGCGTTTCAGATGTCCAGAGGTTCTGTTCCAACCATCCATGATAGGAATGGAAGCTGCAGGCATTCACGAGACAACATACAACTCCATAATGAAATGCGATGTTGATATCAGGAAGGACCTTTATGGTAACATTGTCCTTTCAGGAGGAACGACCATGTTCCCTGGCATTGCTGATAGAATGAGCAAGGAAATTTCTGCATTGGCCCCCAGCAGCATGAAGATCAAGGTTGTCGCACCACCCGAGAGAAAGTACAGTGTCTGGATTGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGATGTGGATTGCGAAGGCAGAATATGATGAGTCAGGGCCATCAATTGTGCACAGAAAGTGCTTCTAA 1134 0.4727 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDFLMKILTERGYSFTTSAEREIVRDVKEKLSYIALDYEQEIETARTSSSVEKSYELPDGQVITIGDERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0130 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Ssu3g0130 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Ssu3g0130 377 PANTHER ACTIN-97 1 376 - -
Ssu3g0130 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Ssu3g0130 377 Gene3D - 10 371 - -
Ssu3g0130 377 SMART actin_3 7 377 IPR004000 -
Ssu3g0130 377 Pfam Actin 5 377 IPR004000 -
Ssu3g0130 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Ssu3g0130 377 PRINTS Actin signature 51 62 IPR004000 -
Ssu3g0130 377 PRINTS Actin signature 63 85 IPR004000 -
Ssu3g0130 377 PRINTS Actin signature 142 161 IPR004000 -
Ssu3g0130 377 PRINTS Actin signature 238 254 IPR004000 -
Ssu3g0130 377 PRINTS Actin signature 28 37 IPR004000 -
Ssu3g0130 377 PRINTS Actin signature 117 130 IPR004000 -
Ssu3g0130 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Ssu3g0130 377 Gene3D - 140 340 - -
Ssu3g0130 377 PANTHER ACTIN 1 376 IPR004000 -
Ssu3g0130 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Ssu3g0130 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0130 Ssu-Chr3 2482632 2484340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0130 1 377 Cytoskeleton Gene Families AT3G12110 97.613 0.0 770
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0130 K10355 - gmx:100792119 756.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2551 8 65524884 65526426 Ssu3g0130 3 2482632 2484340 PCT