Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0128 ATGGAGAAGGATCTGTGCAGGAGCATCAACCCTGATGAGGCAGTTGCTTATGGTGCAGCTGGGCAGGCTGCATTGTTGAGTGAAGGCATTAAGAATGTTCCAAACTTGGTGCTGTTGGATGTTACACCGCTGACACTAGGTTGGCAATTAGTAGGAGATATCATGGGGGTTATGATTCCTTGGAATACTACTATTCCTGTAAAGTGGACAAAAGAATTCTACACAGATCAGGAATGCTTTGAAGAAGGAGGATATCAGGTCAAAGCTTCGGTCACAAGAAAAGGAGTATATCAGTTTTGCAATAGTTGGGCCACGGATTTGCTTGATGGTAATAACCATCAAGATGATATAGTTGTGTTTGAGGATTGCCTGACAGACCTTATGAGCATCTTTGAACTTGTCAATGCCGTGGGTAAGATTGATTAG 426 0.4296 MEKDLCRSINPDEAVAYGAAGQAALLSEGIKNVPNLVLLDVTPLTLGWQLVGDIMGVMIPWNTTIPVKWTKEFYTDQECFEEGGYQVKASVTRKGVYQFCNSWATDLLDGNNHQDDIVVFEDCLTDLMSIFELVNAVGKID 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0128 141 PRINTS 70kDa heat shock protein signature 35 54 - -
Ssu3g0128 141 PRINTS 70kDa heat shock protein signature 9 29 - -
Ssu3g0128 141 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 32 77 IPR029047 -
Ssu3g0128 141 PANTHER HEAT SHOCK 70 KDA PROTEIN 2 78 - -
Ssu3g0128 141 Pfam Hsp70 protein 2 76 IPR013126 GO:0005524|GO:0140662
Ssu3g0128 141 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 25 93 IPR029047 -
Ssu3g0128 141 PANTHER HEAT SHOCK PROTEIN 70KDA 2 78 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0128 Ssu-Chr3 2473452 2474755 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0128 3 75 Calmodulin-binding Proteins AT3G12580 63.514 1.48e-23 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0128 K03283 - vra:106758509 103.99