Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0112 ATGATTGAGATGGATGAGCAAATTATGTCATCTCCTAATACATTGGTACAGTGTCGAATATGCCACGATGATGATGCAGACTCAAACATGGACACACCCTGTTCTTGTCGTGGCACATTGAAGTATGCACACCAAAAATGTGTTCAAAGATGGTGCAATGAGAAAGGAGATACTACCTGTGAAATTTGCCAACAGCAACTTAAGCCTGGCTATACTGCACCTCCACCGCCTCCTCTATTCCATTATGGTGGTTCACCAATAAATTTGGGAGGGAACTGGGAGATTTCAAGAAGGGATCTTCAAAACCATCAGTTCATAGCAATGTTTAATGCTAATCGTGAATTCCTAGaacttgaatttgaatattcatCAGCAACCTCTACAAGAAGCCTGATATTTTGCCGCATTGTTGCCATTATTTTTATTGTCCTTCTTCTTTTACGCCATACACTTCCAATCATATTTATACTCAGTGGAGCAGGAGAGCGTTCATTGACAGTGTGTATGGTTACTATGTTAGTGGTGTTAAGAATCATTGGAATGATTGTACCAGTGTATATAATGGTTAAAGCTATTATTGCAATCCAACGGTTTCAATACCAGGGTCATCAGCATTCCCTTATGCAAGGACATGAGGATAATGAAATAGGACAATCTCAGTTGCGTGTCATTCATATTCAGTGA 684 0.3889 MIEMDEQIMSSPNTLVQCRICHDDDADSNMDTPCSCRGTLKYAHQKCVQRWCNEKGDTTCEICQQQLKPGYTAPPPPPLFHYGGSPINLGGNWEISRRDLQNHQFIAMFNANREFLELEFEYSSATSTRSLIFCRIVAIIFIVLLLLRHTLPIIFILSGAGERSLTVCMVTMLVVLRIIGMIVPVYIMVKAIIAIQRFQYQGHQHSLMQGHEDNEIGQSQLRVIHIQ 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0112 227 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 3 217 IPR033275 -
Ssu3g0112 227 SUPERFAMILY RING/U-box 15 67 - -
Ssu3g0112 227 CDD RING_CH-C4HC3_MARCH 18 64 - -
Ssu3g0112 227 ProSiteProfiles Zinc finger RING-CH-type profile. 10 70 IPR011016 GO:0008270
Ssu3g0112 227 Pfam RING-variant domain 18 63 IPR011016 GO:0008270
Ssu3g0112 227 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 3 217 - -
Ssu3g0112 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 72 IPR013083 -
Ssu3g0112 227 Pfam Protein of unknown function (DUF3675) 69 192 IPR022143 -
Ssu3g0112 227 SMART ringv_2 17 64 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0112 Ssu-Chr3 2107506 2109779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0112 3 64 C3H Transcription Factor Family AT2G37950 38.462 1.71e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0112 - - gmx:100806609 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0112 3 2107506 2109779 Ssu3g0112 3 2107506 2109779 ECH