Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0111 ATGGCTTTGCAAAACATTGGTGCTGCAAACAGTGATGATGCCTTTTACAGGTATAAGATGCCTAAAATGATTACCAAAATTGAGGGCAGAGGTAATggcatcaaaacaaatattGTCAATATGGTTGATATTGCGAAAGCCTTGGCAAGGCCAGCTTCATACACAACAAAGTATTTTGGTTGTGAGCTTGGAGCCCAATCAAAATTTGATGAGAAAACTGGGACTTCTCATGTTAACGGGGCACATGATACTGCAAAACTTGCTGGCCTTCTTGAGAACTTCATTAAGAAATATGTCCAGTGTTATGGTTGTGGAAACCCTGAAACTGAGATCTTAATTACGAAGAATCAAATGATCCAGCTGAAATGTGCTGCTTGTGGGTTCGTCTCTGATGTTGATATGAGAGACAAGTTAACTACCTTCATCGTTAAGAACCCTCCCGAAGTGAGGAAAGGATCCAAAGACAAGAAGGTGATGAGGAGAGCTGAGAAGGAGAGACTGAAGGAAGGTGAAGTAGCCGATGAGGAACAGAAGAAACTGAAGAAAGAGGTTAAGAAGAAAGGAACTTTGTCTTCTAAGGATGTCCCCACAAAATCTACCTCTTCAAGGAAAAAGGCAAATGGCTCTGATGAAGACCGTACATCTCCCCCTCGCAGTCAGATTGATGAGAAGGATGAGGCTCTTGATGAAGAAGAAGGTGATGATGAGGTACAATGGCAAACAGATACATCACTGGAGGCTGCTCGTCAACGAATCCAGGAACAGTTGAGTGCTGTGACAGCGGATATGGTCATGCTCTCGACAAATGAACCagagaagaaggagaaagcAGCAACTAAGGTAAGTGATAACTCTGATAATGGTAACTCCATGACCTACAGGACACTGGTTGGGGAAGTCAAAGCAAATTTGAATAAAGGAGTTAAGGCAAAGGAGTTGCTGTCCCGTCTGGCAGCACTTCCTGCATCGGCTCAGGAAAAGATGAGTGCTCTGTATGAAGCCCTATTTGAGGGCCTAGAGAAAGGGTTTGCAAAAGAAGCAAATAAGAAGAAGAGCTACCTTGCTGCTGCAGTTGCCGAGGAAGAGGGTTTGCAGTTGTTACTGCTGCGTGCAATTGAGGAATTTTCTTGTAAGTCCACGTCCAATGCGTTGAAGGAGGTTGCCCTGGTTCTGAAGGCACTCTACGATGCTGATGTGTTGGAGGAAGAGCACATAGTGCAGTGGTATCAAAAGGGACTGAAGGGCGATAACAAGAACTCTCAGATTTGGAAGAATGCTCAACCTTTCATTGATTGGCTTCAGAATGCAGAATCAGAGACAGAGGAAGAATAA 1332 0.4294 MALQNIGAANSDDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSHVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETEILITKNQMIQLKCAACGFVSDVDMRDKLTTFIVKNPPEVRKGSKDKKVMRRAEKERLKEGEVADEEQKKLKKEVKKKGTLSSKDVPTKSTSSRKKANGSDEDRTSPPRSQIDEKDEALDEEEGDDEVQWQTDTSLEAARQRIQEQLSAVTADMVMLSTNEPEKKEKAATKVSDNSDNGNSMTYRTLVGEVKANLNKGVKAKELLSRLAALPASAQEKMSALYEALFEGLEKGFAKEANKKKSYLAAAVAEEEGLQLLLLRAIEEFSCKSTSNALKEVALVLKALYDADVLEEEHIVQWYQKGLKGDNKNSQIWKNAQPFIDWLQNAESETEEE 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0111 443 CDD W2_eIF5 326 441 - -
Ssu3g0111 443 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Ssu3g0111 443 Pfam eIF4-gamma/eIF5/eIF2-epsilon 365 443 IPR003307 GO:0005515
Ssu3g0111 443 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 11 101 IPR016189 GO:0003743|GO:0006413
Ssu3g0111 443 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Ssu3g0111 443 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Ssu3g0111 443 MobiDBLite consensus disorder prediction 147 239 - -
Ssu3g0111 443 ProSiteProfiles W2 domain profile. 283 443 IPR003307 GO:0005515
Ssu3g0111 443 SUPERFAMILY ARM repeat 293 437 IPR016024 -
Ssu3g0111 443 Gene3D - 2 104 - -
Ssu3g0111 443 Gene3D - 280 434 - -
Ssu3g0111 443 MobiDBLite consensus disorder prediction 148 224 - -
Ssu3g0111 443 SMART 542_3 351 439 IPR003307 GO:0005515
Ssu3g0111 443 Gene3D - 105 145 - -
Ssu3g0111 443 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5-LIKE 1 443 - -
Ssu3g0111 443 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1 443 IPR045196 GO:0003743|GO:0006413
Ssu3g0111 443 MobiDBLite consensus disorder prediction 225 239 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0111 1 436 Eukaryotic Initiation Factors Gene Family AT1G36730 64.350 0.0 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0111 K03262 - gmx:100777906 731.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0111 3 2090371 2104361 Ssu3g0111 3 2090371 2104361 ECH