Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0110 ATGACCATTGTTGCATCTACCACCGCTGCCGCCGCCACCATGTCTGTCGCCGCCATCATTGTCGCTACTATCGCCGCTACAACCATGATTGATGATAgtgacaacaatggtggcaATGGTCACAATCGAAATGCAAGCATTCAAAGCATTCACGCGACCATCCTTTGGAAGAAGAGTACCTTGCTCTCTGCCTCATCATGCTCGCTCGCGACTATTAATTGTTACGATGCCATTCCTTCACCTGAGGCATTATCGCAATCGACCCTAGATCCTTCCAAGCTCAGTTGCAAATGCTTCGTTTACGACAAAATCTTCCTCTATTACCCAGCGCTCGAGGGACAGAAGGCTAATCATCGAAAACTCGTCGGTAGCAGCGAAGATCAACCCACCTCCTcctctgccaccaccaccaccagttCTGCCGACAATAATGGCAAAAGAGGTAGGACCCACGAGTGTTCCATCTGTCAGAAATCCTTCCCCACCGGATGGGCCTTGGGCAGACATAAACGTCACTATGAAGATAACAGtaacaaaaatagtaataatgttGTTAcaagaaaagaggaaagaaaaaaagaagccaCCGCTAGAAATCACCTTCGGCAGCAGCACACGATGGTCGACAAATAG 633 0.4218 MTIVASTTAAAATMSVAAIIVATIAATTMIDDSDNNGGNGHNRNASIQSIHATILWKKSTLLSASSCSLATINCYDAIPSPEALSQSTLDPSKLSCKCFVYDKIFLYYPALEGQKANHRKLVGSSEDQPTSSSATTTTSSADNNGKRGRTHECSICQKSFPTGWALGRHKRHYEDNSNKNSNNVVTRKEERKKEATARNHLRQQHTMVDK 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0110 210 PANTHER ZINC FINGER PROTEIN ZAT10 83 197 - -
Ssu3g0110 210 Pfam C2H2-type zinc finger 151 175 - -
Ssu3g0110 210 Coils Coil 178 198 - -
Ssu3g0110 210 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 83 197 IPR044653 GO:0003700
Ssu3g0110 210 MobiDBLite consensus disorder prediction 171 210 - -
Ssu3g0110 210 MobiDBLite consensus disorder prediction 184 210 - -
Ssu3g0110 210 MobiDBLite consensus disorder prediction 119 150 - -
Ssu3g0110 210 MobiDBLite consensus disorder prediction 123 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0110 Ssu-Chr3 2070888 2075694 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0110 79 184 C2H2 Transcription Factor Family AT1G27730 46.429 1.59e-16 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu3g0110 zf-C2H2_6 3.6e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0110 - - gmx:547886 114.775