Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0108 ATGGATTCCGAAACCCTAGACTCCACCCATCTCTTCCTCACCGCCCTCCAAACCCTCCAACCCCAACCCTCTCCACCAGCCTCACCCTCCCTCCCCCCAGTCCCCCCCTCTGTCCCCCACTCCAAACTCATCCCCCACACCCGCTTCCTCGTCGATGCCTTCCGCCACGCCGGCCCCCACTCCCTCTCCTACTTCCTCTCCCACTTCCACTCCGACCACTACGCCGGCCTCTCCCCCTCCTGGTCCCGCGGCATCGTCTTCTGCTCCCCCACCACCGCCCTCCTCCTCCGCCGCGTCCTCCGCGTCCCCGCCCCCTTCGTCGTCCCCCTCCCCCTACGCCGACCGCTCCGCATCGACGGCGCCGAAGTCACCCTCCTCGACGCCAACCACTGCCCCGGCGCCGTCCAGTTCCTCTTCGCCGTCCCCCGCCCCGACGGCACCGCCCTCAGGTACGTCCACACCGGCGATTTCCGCTTTTCTAATTCCATGATTTCGGAACCCGCCCTAGCTCCCTTCGTCGGTGCCGATGCCGTGTTTCTCGACACCACCTATTGTAACCCTAAGTTCGTGTTCCCCTCGCAAGAGGAATCTGTTGAGTATGTTGCAAATGTTGTAGAGACGGTCGAGCGTGAGCGTGaggatggtggtgatggtgttttgtttcttgttgCTACTTATGTTGTTGGGAAGGAGAAGATTTTGCTTGAGCTTGCGCGTAGGTTTAAGAGGAAGATACATGTTGATGCTAAGAAAATGGAGGTTTTGAGGGTTCTTGGGTATGGGGAGAGTGGTGAGTTTACGGAGGATGGGAAGGAGAGTAATATTCATGTTGTTGGGTGGAATGTGTTGGGGGAGACTTGGCCTTACTTTAGGCCTAATTTTGTTAGAATGAAGGGGGTTATGGCTGATAGAGGGGGCTCCTACTCCAAGGTTGTGGGGTTTGTTCCCACCGGGTGGACCTATGAGGTGAAGCGGAGTAGGTTTGCGGTCAAGTCCAAGGATTCGTTTCACATTCATCTTGTGCCGTATAGTGAGCACTCGAACTATGACGAGCTCAGGGAGTATGTGAAGTTTTTGAAGCCGAAGCGTGTTGTTCCGACAGTGGGTTTGGATGTTGAGAAGAGTGACAGTAAACATGCTGACAAAATGAGGAAGTATTTTGCCGGGTTGGTTGATGAGATGGCCAACAAGCAGGAGTTTTTAAGGGGTTTTTGTCAAGCCACTGGTGAAGTGGGTTTCGAGGATGAGAAGGGTGTTAGTGATGCTCTGAAACCCGGGGGAGGCATGGAGAAAGAAGTCAATCCATTGGAGACAGAAGGTGATAAAAGTATTGATTCAGATGTGGCTGTGAGTTTGCCCTCTTTTATGGGAGAAACTTGTACACGATATCCTACTTTACTgactgaagaagaaaaagagaaaataattcaaGAACTTAGTTGTTGTTTGCCCACTTGGGTCACTAGAAACCAGGTGTTAGATCTGATCAGCATCTCAGGGAGCAATGTTGTTGAAGCTGTTTCTAATTTCTATGAACGTGAAACTGAATTTCATGAGCAAGTGAATTCCTGTCAAACTTCTGTTTCAACATCAAAATGTTGTCCATTAAATGACACTGATTCACTTGCAAAATCGTGCCTTAATACAAAAAACACTGGCAAAAATATTGACATTTTTCCAAGTCAagacactaaattaactaaccTGAGGCATACGGTACCAAGTTCCATTTCTCCTGCCAAAAGGAGGAGAAGTAGTGAAAgtaagcaaaacaaaaaagtcAAAGTCAAAGCAAAATCTGAATCAAGTGGTTCAAAGCAGTCCACAATCACAAGATTCTTCAGTAAAGTAATGCCTGAGATGTCTGGTGGTACTCAATCTGATAATTTTGGTCCAAAGCTTGACCAAAGCTCTAAAGTTGAAGACTTGTTGCCTACTGATGTTGGACAAATGTACAAGGATGAGATTGATCAATTTATGCAAATAATAAATGGGAACGAGTCACTAAAAGAATATGCCATCACTATAATTGAGAAGGCAAAAGGAGATGTCAATAAGGCATTGGACATATATTACTGTAATTCTGACAATTTTGGTGAAAATGAAATATCAGTTCAAGTGGAGAGCAAAATTGATATACCTGTAGTGAGGAAGCATGCATCAGAGGAATTGGGAATTATACCTGATACTTTTGAGCAGAAAGTGTTAAAAGATAATGTAGATGCTGCATATCTATCTCTACCGCCTGAGAAATACAACCCTAAAGAACatgCATGTTGGAGAGATGGACAGCCTGCACCATATTTACACATTGCACGAACCTTCAACCTGCTTGAGTGTgagaaaggaaagataaaagcTACTTCATTGTTATGCAATATGTTCAGAAGTTTGTTGGCCTTGTCTCCAGCAAATGTGCTTCCTGCTGTGTATCTATGCACAAACAAAATTGCTGCAGACCATGAAAATAAGGAACTAAATATTGGTGGAAGTTTAGTCACTGCTGCACTTGAAGAGGCATGTGGAACAAATCGATTGAAAATAAGGGAGATGTATAACAAATTTGGTGATCTTGGTGATGTTGCTCAAGAGTGTCGTCAAACTCAGAGATTGCTTGCACCACCTACACCACTTCTAATTAAGGATGTTTTCTCTGCACTACAAAAGATAAGTATACAAACAGGCAGTGGAAGCACATCTCGGAAGAAAGGCATCATTGTTCATCTCATGCGTTCCTGCCGTGAGAAGGAGATGAAGTTTCTTGTTCGGACCTTgGTCAGGAACCTAAGGATTGGGGCAATGCTTAGAACTGTTTTACCTGCATTGGCTCATGCTGTTGCCATGAATTCTTGCCCTACTTTGCACCAAGAAGGAACTGCAgaaaatttgaaggagaaaCTTCAGGTTCTTTCTACGGCAGTTGTTGAAGCATATAACATTCTGCCAAATTTGGATCTCATAGTTCCATCTCTCATGAGCAAAGGCATTGATTTTTCAGTTTCAAGTTTATCAATGGATCCAGGAATCCCTATTAAGCCTATGCTAGCGAAGATCACCAATGGTATTCCCCAGGCATTGAAGCTATTTGAAAATAAAGCATTTACATGTGAATATAAGTATGATGGTCAGCGAGCTCAAATTCACAAATTAGTTGATGGATCAGTTCGTGTTTTTTCAAGAAATGGGGACGAATCAACTTCAAGATTTCCTGATCtgattgatataattaaggAATCCAGCAACCCTGTTGCATCGACTTTCATAATAGATGCAGAAATTGTTGGTATTAACAGAAAAAATGGATATAGGATTATGTCTTTCCAGGAGCTATCTTCACGTGGGAGAGGTGGTAAAGATACGTTAGTTACTACAGAGAGCATCAAGGTGGATATTTGCATCTTTGTCTTTGATATCATGTTCGCAAATGGAGAGCAGTTATTGGGTTTTCCTCTCCGCCTTAGACGAAAGTATCTGAAGGATTTGTTCTATGATGAGAAACCTGGGTATTTTGAATATGCAAAGGAAACAACTATTGAAGCAGATGATGCTTGCTTAACCTGTGAAGCCACATTAACTAAGATAAATGCTTTCCTGGAAGATGCACTTCGCTCTTCATGTGAAGGAATTATGGTGAAAACATTGGATGTTGATGCTGGGTATTCTCCATCAAAGCGTTCTGACAAATGGTTAAAGGTCAAGCGAGATTATGTGGAAGGATTAAATGATACTCTTGATTTAGTACCGATTGGTGCTTGGCATGGAAATGGAAGGAAAGCTGGATGGTATAGTCCATTTCTTATGGCATGTTTCAATCCTGAAACTGAGGAGTATCAGAGTGTATGTCGTGTGATGTCTGGATTCTCAGATTCATTTTACATAGAGATGAAAGAATTCTTCTCAGGGGACAAAGTTTTGTCCAAAAAGCCACCATATTATCAAACAGGAGAGGCACCAGACATGTGGTTTTGTCCACATGTCGTTTGGGAAATAAGAGGAGCAGACTTTACAGTATCCCCAGTTCATCATGCTGCCATTGGTTTAGTTCATCCATCTCGAGGCATCTCAATCAGATTTCCAAGATTTATTCGCTGTGTCTCAGACAGAAACCCAGAAGAATGTAGCACAGCTGCTGATATAGTTGAAATGTTTCATTCCCAGACTCGGAAGATGGATGTCCCAGTTGAAGATTGA 4191 0.4288 MDSETLDSTHLFLTALQTLQPQPSPPASPSLPPVPPSVPHSKLIPHTRFLVDAFRHAGPHSLSYFLSHFHSDHYAGLSPSWSRGIVFCSPTTALLLRRVLRVPAPFVVPLPLRRPLRIDGAEVTLLDANHCPGAVQFLFAVPRPDGTALRYVHTGDFRFSNSMISEPALAPFVGADAVFLDTTYCNPKFVFPSQEESVEYVANVVETVEREREDGGDGVLFLVATYVVGKEKILLELARRFKRKIHVDAKKMEVLRVLGYGESGEFTEDGKESNIHVVGWNVLGETWPYFRPNFVRMKGVMADRGGSYSKVVGFVPTGWTYEVKRSRFAVKSKDSFHIHLVPYSEHSNYDELREYVKFLKPKRVVPTVGLDVEKSDSKHADKMRKYFAGLVDEMANKQEFLRGFCQATGEVGFEDEKGVSDALKPGGGMEKEVNPLETEGDKSIDSDVAVSLPSFMGETCTRYPTLLTEEEKEKIIQELSCCLPTWVTRNQVLDLISISGSNVVEAVSNFYERETEFHEQVNSCQTSVSTSKCCPLNDTDSLAKSCLNTKNTGKNIDIFPSQDTKLTNLRHTVPSSISPAKRRRSSESKQNKKVKVKAKSESSGSKQSTITRFFSKVMPEMSGGTQSDNFGPKLDQSSKVEDLLPTDVGQMYKDEIDQFMQIINGNESLKEYAITIIEKAKGDVNKALDIYYCNSDNFGENEISVQVESKIDIPVVRKHASEELGIIPDTFEQKVLKDNVDAAYLSLPPEKYNPKEHACWRDGQPAPYLHIARTFNLLECEKGKIKATSLLCNMFRSLLALSPANVLPAVYLCTNKIAADHENKELNIGGSLVTAALEEACGTNRLKIREMYNKFGDLGDVAQECRQTQRLLAPPTPLLIKDVFSALQKISIQTGSGSTSRKKGIIVHLMRSCREKEMKFLVRTLVRNLRIGAMLRTVLPALAHAVAMNSCPTLHQEGTAENLKEKLQVLSTAVVEAYNILPNLDLIVPSLMSKGIDFSVSSLSMDPGIPIKPMLAKITNGIPQALKLFENKAFTCEYKYDGQRAQIHKLVDGSVRVFSRNGDESTSRFPDLIDIIKESSNPVASTFIIDAEIVGINRKNGYRIMSFQELSSRGRGGKDTLVTTESIKVDICIFVFDIMFANGEQLLGFPLRLRRKYLKDLFYDEKPGYFEYAKETTIEADDACLTCEATLTKINAFLEDALRSSCEGIMVKTLDVDAGYSPSKRSDKWLKVKRDYVEGLNDTLDLVPIGAWHGNGRKAGWYSPFLMACFNPETEEYQSVCRVMSGFSDSFYIEMKEFFSGDKVLSKKPPYYQTGEAPDMWFCPHVVWEIRGADFTVSPVHHAAIGLVHPSRGISIRFPRFIRCVSDRNPEECSTAADIVEMFHSQTRKMDVPVED 1396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0108 1396 ProSiteProfiles ATP-dependent DNA ligase family profile. 1124 1271 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Ssu3g0108 1396 Gene3D - 745 1015 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Ssu3g0108 1396 PANTHER DNA LIGASE 3 770 - -
Ssu3g0108 1396 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 973 1234 - -
Ssu3g0108 1396 CDD OBF_DNA_ligase_I 1242 1385 - -
Ssu3g0108 1396 CDD Adenylation_DNA_ligase_I_Euk 1007 1236 - -
Ssu3g0108 1396 Pfam DNA repair metallo-beta-lactamase 264 369 IPR011084 -
Ssu3g0108 1396 MobiDBLite consensus disorder prediction 572 610 - -
Ssu3g0108 1396 Gene3D - 190 346 - -
Ssu3g0108 1396 SUPERFAMILY Metallo-hydrolase/oxidoreductase 47 369 IPR036866 -
Ssu3g0108 1396 Pfam ATP dependent DNA ligase domain 1013 1233 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Ssu3g0108 1396 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 3 770 - -
Ssu3g0108 1396 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1037 1045 IPR016059 GO:0003909
Ssu3g0108 1396 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 747 996 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Ssu3g0108 1396 CDD SNM1A-1C-like_MBL-fold 42 187 - -
Ssu3g0108 1396 Gene3D - 1238 1393 IPR012340 -
Ssu3g0108 1396 Pfam ATP dependent DNA ligase C terminal region 1259 1367 IPR012309 GO:0003910|GO:0006281|GO:0006310
Ssu3g0108 1396 SUPERFAMILY Nucleic acid-binding proteins 1242 1386 IPR012340 -
Ssu3g0108 1396 Pfam DNA ligase N terminus 767 943 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Ssu3g0108 1396 Gene3D DNA ligase/mRNA capping enzyme 1042 1173 - -
Ssu3g0108 1396 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 825 1383 IPR000977 GO:0003910|GO:0005524|GO:0071897
Ssu3g0108 1396 Gene3D - 1024 1237 - -
Ssu3g0108 1396 Gene3D - 44 368 IPR036866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0108 Ssu-Chr3 2033523 2050622 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0108 745 1386 Core DNA Replication Machinery Family AT1G08130 38.354 2.82e-162 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0108 - - gmx:100807673 2402.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0108 3 2033523 2050622 Ssu3g0108 3 2033523 2050622 ECH