Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0104 ATGAAATCAGACGCGGAAGTGCAGATGATCAGTGCTGAAACTCCTCTGCTGATGTCAAAAGCATGTGAGATTTTCATTCAGGAGCTCACTTTTCGTGCCTGGATGAGTGCTGAAGAGAGCAATAAGCGTACTGCGCAGCCCTGTGACGTTGCCAAGGCTATTATGCAAACTGATGCCTTGCATTTCCTCACTGAGCTTGTTCCAAATAACCTCCTCCATTTCTCTGCTTTTGATGCCAAGCAGGAAGAGAATGCTCGAAACATAGCAGAAGGAAGCCAAGCTGCCCTGCCTTACACTGCTGGTTTTATGGGAAATCCTATGATGAATATAGGCAGTAACCTGGAGGCAAGAAACCAACTAATTCCTCAACCCAACATGATGCAGCCACCCTTTATGCCTTCAGATCAATTGCCTTACAATTTTCCTCCCAAGTGA 435 0.4598 MKSDAEVQMISAETPLLMSKACEIFIQELTFRAWMSAEESNKRTAQPCDVAKAIMQTDALHFLTELVPNNLLHFSAFDAKQEENARNIAEGSQAALPYTAGFMGNPMMNIGSNLEARNQLIPQPNMMQPPFMPSDQLPYNFPPK 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0104 144 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1 54 IPR003958 -
Ssu3g0104 144 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA 1 107 IPR027170 GO:0003700|GO:0006355|GO:0016602
Ssu3g0104 144 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 107 - -
Ssu3g0104 144 SUPERFAMILY Histone-fold 1 69 IPR009072 GO:0046982
Ssu3g0104 144 Gene3D Histone, subunit A 1 69 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0104 Ssu-Chr3 1926068 1928724 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0104 1 130 CCAAT-HAP5 Transcription Factor Family AT5G63470 39.706 2.80e-25 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Ssu3g0104 CBFD_NFYB_HMF 8.6e-09 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0104 - K08066 gsj:114370134 124.02