Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0080 ATGGCCGAAGTTGAATACCATGCAAAGCCCAGTTCTAACACTCCACCTCTAATGCTCTTTGGCATCAACATTAACGAGTCCCCAGAAGATCACGCTCACGAAGCAGGTTCGAATTCTGAGCCTTTCAATTCCCGCGACGGCAGAAAATACGAGTGCCAGTACTGCTGCAGAGAATTCGCAAACTCACAGGCACTAGGAGGGCACCAAAACGCGCACAAGAAAGAGAGACAGCTCTTGAAACGTGCTCAAATGCAAGCTGCTCGTGGCTTTGTTGCTTCACACATCCAAAGCGCAATCATATCAGGGTTCTCACCACCATACCAGCAACCTTTGTCGTGGCTGTGCACACCGCATGCAGGTGCAGGTGCAGGTGCTGGCGCATGTCATTCAGGAGCCATAACCTTTGTGGCTCCTGGAAGACGTGTCTATGCTGCAGCTGCTGCTGGTGCCTCCATGGCCTGA 462 0.5216 MAEVEYHAKPSSNTPPLMLFGININESPEDHAHEAGSNSEPFNSRDGRKYECQYCCREFANSQALGGHQNAHKKERQLLKRAQMQAARGFVASHIQSAIISGFSPPYQQPLSWLCTPHAGAGAGAGACHSGAITFVAPGRRVYAAAAAGASMA 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0080 153 Gene3D Classic Zinc Finger 35 98 - -
Ssu3g0080 153 PANTHER ZINC FINGER PROTEIN 5 6 120 IPR044299 GO:0010090
Ssu3g0080 153 PANTHER ZINC FINGER PROTEIN 6-LIKE 6 120 - -
Ssu3g0080 153 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 77 IPR013087 -
Ssu3g0080 153 ProSitePatterns Zinc finger C2H2 type domain signature. 52 72 IPR013087 -
Ssu3g0080 153 SUPERFAMILY beta-beta-alpha zinc fingers 47 77 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0080 Ssu-Chr3 1576217 1576678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0080 11 105 C2H2 Transcription Factor Family AT1G67030 52.525 5.15e-27 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0080 - - gmx:100527555 214.157