Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0077 ATGAATGATTCTACGGGGAGGAATTTGGCCATCGCGGAGAAGAAGGTGCCGCAGAAGCCTGGTGGTTGTGTTGGCATTTTCTTTCAGCTCATTGATTGGAAGAGGAAGCTCACCAAGAAGAAGCTCTTCTCCAAGAAACTTCTTCCTCCTGCTCGTGCAAAAAAGTTTAAGGGAGATGAAAAAATGCCGAGTTCCAAGCTTCACTTGATTGCTAATGAGAATAGTGGAGGTTTCCCTAGTGCCAAAAAGGGTGGGAATCATGGCGGTGATGTAGAGCAAAAGAGTGAGATGCGAGTTCCGAGTCTGGTAGCTAGGTTGATGGGTCTAGAATCTATTCCAGCTGCTCAGCGAGATAAGTCCAAGAAAGCCTTGTGTGCTGCTGATGGGAAGAAGGGGTCCTTGGGTGACCATTGTGAGTTGGATAGGCAAGGCATGGATATGGAAATGGGAGTTGTAAAGCATGATTCAAGACCTCAAAAACTTCAGAAAACCGGGGCTTGTGAGAGAAGGGCGGTGACTAGGTTTGGAGCTGAGGCCTTGCAAATTAAGAGCGTTTTGTCGCGAGCAAGGAAGTAtaatcaccatcatcatcacccTAAGCTTGCTTCTTCTTTGAAGAGCCCAAGAATTCCTTCTGGAAAGAGTGGTTCTCGAAGCTCTAGGTTAATGGGAGCagctactaaaattttggaacCTGGACTGCAAAACAGAAGTAGAGCTAAAAGTTCTCTTACATATCCTGCTTCCATGTATCCTCCTAAGACTGGCATTGTGACGAATGATGTGGAAGATAGGTCAGCAATTTTGCCAAATCAATCTTGTTATGATGCCTGTTCAGCCAAGCGATTGATGGGGCAGACCTCTTGCAAAAATTGTGGTAATTTGCTTGATGTTGTTGACTGCAACCTTGAGGTTGGGGGACAGTCATGTGTTCCTCCACCCATTGTTTCAGATGTTGTCACTGCTACCTCTATGGTATCATCGGAGAAGAAGGGAAAGTCATTCACTCCCTCTCATGGACAAGAAAGAGATGTAGTTCTTCTGGGATGTCAGGAAAAGCACATATCTCTTGTTACTGAAGAAGAGGGAAAAAATAATGCACATCAGTCATGGAGTGAACCTACTGCCAGAAGAATGCTAATGCCCGATGCAGGTCCAGCTAAATGGAATTCATCATGCCAACCATCAAGTACCCTAGAGGACGATGCATCTTCTTTTGCCTTAAAACACAAAACTCAAACACAAGAACAGATGTTAAGAAGTGAAAGATATTCATCTGGATCTACAATGAGTGATATGCAAGTAAAAAGGGTATCATCATCTACGAGCACTATGAATGGGACTAAAGACTTTGTTGCTATGAATAGAAGCCTAGGTGGTCGAACAAGGACAAGGTCACCTACCAAAGTGGATAGTTCTAAATTTGACCTAGAAAAAAAACCTTGTAATAGACAGCATAATTCCTTGTGTCACGTAAGGacattagagagaaaaagaaggatcCCAAATGTCACACAACTAGAAGGCACGGGTTCTGTTTATTCAGTTGGTGCAAAACAGAGAAATCTCCATTTTGATGGACTAGGTGGCAAACAGAGGGACTTCAATGCTTCCTCCTTGAACAAttctattgtaaaaaataaacatgtttgtcaaggagaaaaaattaaggttaatgACAATAAGATCAAAGATGTAGTGTCATTTACATTTAATTCCCCCTTGAAGCAACAGATAGGAATACCTGTCAAGAAGGAAGAGACAAGCAGCGACAATGAGAGTATGACATATTTCCAAAGGCCCTTGAGAGTTGATGCTTTAGGTGCCTTTCTAGAACAAAAATTGAAGGAATTAACCTCTCAAAGAGAAGAGGAGTTGGCTACAGGTGCTCCACCTAAAAAATCAAGTACCATGATTCTTCAAGAGCTGATATCTGCTCTAAGTTCAGAGCATCTGATCTGTCATGATGGCCGTCATACGTTTAATGAAAATGTTGGTTTTCATCATGGGCCAAAACAAGAAAGGTTATTGGGAACCTCTTGCAATGGTAATCATCTCAGTCCTGGATCTGTTTTGGAAGCTTCCTTTTCTTCCAGTAGTCTGGATGAAAGCTCAGGGCATGGTTTTCACCCTGACTCCATGAATTACTCTTATGGTCAATTGGAACAAGATACTGAGCTTTCAGATTCTGCAACGTCCTTTGACAGAGGAGGGAGGATAGGTGAGATACTGAGTGATCTTGTTGTCAACCAAATTCCTAAGGCATTAGAAGGTTTATGCTCTTTTGGAACAAAATTGACAAGAAGCAAGCTCAACTATGTGAAGGATATTCTCATGAATGCTGAGTTGGTGCTTGGAATTGCAACTGACCGCAGAGAGAATGAAGTGCCACGACTTCTAATTTATCGGTTTCTCGTTGATGATCTGGACACTATGGTGGGTGATGCTGTGTGGACAGATTTTAATGGCTTTGTGTGTTGTGAGGATTCTAAACAGGGAAAGGAGCTAAAGGGCTTTCTCCTGGATTGTGTTATAGAATATCTAGAATCAAATTGCTGCCAATATTTTAACTCCGGATTCAAGGCCTGGAAAAAGCTGCCATTATGCATGAAAACTGAGGTGCTGGCTCAAGAGGTGAAGAGGGAGATCAACAAGTGGTTATCTATGGTTGGGATGGTGCCTGATGAAATAATAGAATGGGAAATGAGCCACTCCTTGGGGAAATGGACTGACTTTGATATTGAAGCATTTGAGGCAGGTGTTGATATAGATGGGGATATACTTCAAATTTTGGTTGATGAAGTTGTTGAAGACCTTGTAGGTTGCAAGCAGGGCTCCATTTCCTTCTAA 2850 0.4105 MNDSTGRNLAIAEKKVPQKPGGCVGIFFQLIDWKRKLTKKKLFSKKLLPPARAKKFKGDEKMPSSKLHLIANENSGGFPSAKKGGNHGGDVEQKSEMRVPSLVARLMGLESIPAAQRDKSKKALCAADGKKGSLGDHCELDRQGMDMEMGVVKHDSRPQKLQKTGACERRAVTRFGAEALQIKSVLSRARKYNHHHHHPKLASSLKSPRIPSGKSGSRSSRLMGAATKILEPGLQNRSRAKSSLTYPASMYPPKTGIVTNDVEDRSAILPNQSCYDACSAKRLMGQTSCKNCGNLLDVVDCNLEVGGQSCVPPPIVSDVVTATSMVSSEKKGKSFTPSHGQERDVVLLGCQEKHISLVTEEEGKNNAHQSWSEPTARRMLMPDAGPAKWNSSCQPSSTLEDDASSFALKHKTQTQEQMLRSERYSSGSTMSDMQVKRVSSSTSTMNGTKDFVAMNRSLGGRTRTRSPTKVDSSKFDLEKKPCNRQHNSLCHVRTLERKRRIPNVTQLEGTGSVYSVGAKQRNLHFDGLGGKQRDFNASSLNNSIVKNKHVCQGEKIKVNDNKIKDVVSFTFNSPLKQQIGIPVKKEETSSDNESMTYFQRPLRVDALGAFLEQKLKELTSQREEELATGAPPKKSSTMILQELISALSSEHLICHDGRHTFNENVGFHHGPKQERLLGTSCNGNHLSPGSVLEASFSSSSLDESSGHGFHPDSMNYSYGQLEQDTELSDSATSFDRGGRIGEILSDLVVNQIPKALEGLCSFGTKLTRSKLNYVKDILMNAELVLGIATDRRENEVPRLLIYRFLVDDLDTMVGDAVWTDFNGFVCCEDSKQGKELKGFLLDCVIEYLESNCCQYFNSGFKAWKKLPLCMKTEVLAQEVKREINKWLSMVGMVPDEIIEWEMSHSLGKWTDFDIEAFEAGVDIDGDILQILVDEVVEDLVGCKQGSISF 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0077 949 MobiDBLite consensus disorder prediction 208 222 - -
Ssu3g0077 949 Pfam DUF761-associated sequence motif 92 118 IPR032795 -
Ssu3g0077 949 MobiDBLite consensus disorder prediction 190 247 - -
Ssu3g0077 949 MobiDBLite consensus disorder prediction 410 434 - -
Ssu3g0077 949 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 9 941 - -
Ssu3g0077 949 Pfam Domain of unknown function (DUF4378) 771 934 IPR025486 -
Ssu3g0077 949 PANTHER DNAA INITIATOR-ASSOCIATING PROTEIN 9 941 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0077 Ssu-Chr3 1558559 1563939 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0077 1 939 TRM (TON1 Recruiting Motif) Superfamily AT1G67040 31.346 1.05e-84 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0077 - - gmx:100813026 1527.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0077 3 1558559 1563939 Ssu3g0077 3 1558559 1563939 ECH