Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0064 ATGCGGATGAGCTGCAATGGATGCCGGGTTCTGAGAAAAGGTTGCAGCGAGAATTGCAGCATCAGACCCTGTTTACAATGGATCAAAAGTCCAGAATCTCAAGCCAATGCTACTGTGTTTCTCGCTAAGTTCTATGGCCGTGCTGGCCTCATGAACCTCGTTAACGCAGGCCCCGAACATCTCCGTCCAGCCATCTTTCGTTCGTTGTTGTACGAGGCATGCGGGCGGATAGTGAACCCGATTTACGGTTCAGTGGGTTTGTTATGGTCGGGGAGCTGGCAGCTGTGCCAAGCCGCCGTGGAAAACGTCTTGAAAGGCGCACCGATTACGCCGATTACTTCCGAAGCGGCGGCTAGCGGGCGGGGCCCACCCCTCAAGGCTTACGACATACGCCACGTGTCCAAAGACGAAAACTCCGCCGCGTCAAACGAAACTCAGCAACGAGTCAAGACTCGGTCCAGAGTGAAGCGGCCCGTCACCGCCAAGCCCAAATCCACCAACGAAAACAACAACGATAATAAGGGAACCGAATTGGGTTCGGCCGAACCGGGTTTGGTGACGAGCGAGTGGACCGAAGAGGTGTTGAACCGGTCTGGGAGTCATGATTCGTCGCTGAGCCACCAGTCGGAGGCGGCGAATGCGGTGGAGAGCGAGAGCATGGTGTCGGTGGAGACGGCGGAGACTTCGATTCTCTTCCGAGATGAACCGGAGTCGAACCCGAAGCGTGTGGACCGAACCGAAGAGGGTGGTGGTGAGCATGTTGGTCTAGAGCTCACGCTCGGGTTCGAACCGATTTCACGTGTGCATCACGTGGTTCCGATGAAGAAGAGAAGGATTGAGTTGAAGGAGTTTAGAGGCTCGGCTGAGAGTGGCTCGTGCAAGATGGAGCTGGGACTTGAATACTCGGCTTGA 912 0.5581 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVENVLKGAPITPITSEAAASGRGPPLKAYDIRHVSKDENSAASNETQQRVKTRSRVKRPVTAKPKSTNENNNDNKGTELGSAEPGLVTSEWTEEVLNRSGSHDSSLSHQSEAANAVESESMVSVETAETSILFRDEPESNPKRVDRTEEGGGEHVGLELTLGFEPISRVHHVVPMKKRRIELKEFRGSAESGSCKMELGLEYSA 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0064 303 MobiDBLite consensus disorder prediction 160 177 - -
Ssu3g0064 303 PIRSF AS2 1 303 IPR017414 -
Ssu3g0064 303 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Ssu3g0064 303 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
Ssu3g0064 303 MobiDBLite consensus disorder prediction 133 252 - -
Ssu3g0064 303 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 300 - -
Ssu3g0064 303 MobiDBLite consensus disorder prediction 191 226 - -
Ssu3g0064 303 MobiDBLite consensus disorder prediction 230 252 - -
Ssu3g0064 303 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0064 Ssu-Chr3 1296423 1297483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0064 1 299 AS2 family AT3G02550 56.146 4.00e-109 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu3g0064 LOB 2.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0064 - - gmx:100807854 515.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0064 3 1296423 1297483 Ssu3g0064 3 1296423 1297483 ECH
Ssu3g0064 3 1296423 1297483 Ssu9g0576 9 27069098 27070782 ECH
Ssu7g0316 7 5320296 5321278 Ssu3g0064 3 1296423 1297483 ECH