Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0049 ATGGCGGCAACAGATTATTCTCGGGAGGAGAACGTTTACATGGCGAAGTTGGCGGAGCAGGCTGAGCGGTACGAGGAGATGGTGGAGTTCATGGAGAAGGTTGCGAAGACGGTGGAGGTTGAGGAGTTAACGGTGGAGGAGAGGAACCTGCTCTCTGTGGCTTACAAGAACGTGATTGGGGCGAGGAGGGCTTCGTGGAGGATCATATCCTCCATTGAGCAGAAGGAGGAGAGTAGAGGCAATGAGGACCACGTGGCCATTATAAAGGAGTACAGGGGCAAGATTGAGGCTGAACTCTGCAAGATCTGTGATGGGATTTTGGACCTCCTTGAGTCAAACCTCATTCCTTCTGCTGCATCTCCCGAGAGTAAAGTcttttaccttaaaatgaagGGTGATTACCACAGGTACCTTGCTGAGTTTAAGACTGGGGCAGAGAGGAAAGAGGCTGCAGAGAGTACTTTGCTTGCTTACAAATCGGCTCAGGATATTGCTCTTGCTGACCTGGCCCCCACCCACCCCATTAGGCTGGGACTCGCTCTCAACTTTTCTGTGTTCTATTATGAAATTCTTAACTCGCCAGATCGTGCTTGTAATCTTGCCAAGCAGGCATTTGATGAGGCAATTTCCGAGCTTGACACATTGGGTGAAGAGTCATACAAGGATAGTACACTGATCATGCAACTTCTCCGTGACAATCTGACTTTGTGGACATCAGACATCACGGACGATGCTGGTGATGAGATCAAGGAAACATCTAAGCAACAACCAAGTGAATAG 780 0.4833 MAATDYSREENVYMAKLAEQAERYEEMVEFMEKVAKTVEVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVAIIKEYRGKIEAELCKICDGILDLLESNLIPSAASPESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLLAYKSAQDIALADLAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDITDDAGDEIKETSKQQPSE 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0049 259 SUPERFAMILY 14-3-3 protein 7 240 IPR036815 -
Ssu3g0049 259 SMART 1433_4 8 251 IPR023410 -
Ssu3g0049 259 Pfam 14-3-3 protein 14 238 IPR023410 -
Ssu3g0049 259 ProSitePatterns 14-3-3 proteins signature 1. 48 58 IPR023409 -
Ssu3g0049 259 PRINTS 14-3-3 protein zeta signature 184 210 IPR000308 -
Ssu3g0049 259 PRINTS 14-3-3 protein zeta signature 122 144 IPR000308 -
Ssu3g0049 259 PRINTS 14-3-3 protein zeta signature 157 183 IPR000308 -
Ssu3g0049 259 PRINTS 14-3-3 protein zeta signature 211 240 IPR000308 -
Ssu3g0049 259 PRINTS 14-3-3 protein zeta signature 42 71 IPR000308 -
Ssu3g0049 259 PRINTS 14-3-3 protein zeta signature 91 115 IPR000308 -
Ssu3g0049 259 PANTHER 14-3-3 PROTEIN 5 256 IPR000308 -
Ssu3g0049 259 Coils Coil 14 41 - -
Ssu3g0049 259 PIRSF 14-3-3 2 250 IPR000308 -
Ssu3g0049 259 Gene3D - 1 251 IPR036815 -
Ssu3g0049 259 PANTHER 14-3-3-LIKE PROTEIN GF14-F 5 256 - -
Ssu3g0049 259 ProSitePatterns 14-3-3 proteins signature 2. 220 239 IPR023409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0049 Ssu-Chr3 1021550 1023628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0049 7 259 14-3-3 family AT3G02520 89.370 7.32e-169 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0049 K06630 - gmx:547889 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0049 3 1021550 1023628 Ssu3g0049 3 1021550 1023628 ECH