Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0039 ATGCTTAAGCAAGAAGTCGTGTCCAGTGGGAATAATGTGGGTGGTGGCAAAGCTTGGATCTTACACGGTCCATATAGGGAGTTGCTTTATGAGCCACATGCTGATAAGCCTGATGTGATGAGTAGATCACGTCATCCTTGCATTTACACCTTTTCTGGTTTAATAAAAGGATTTTCAATTAGATCTCAGTCATTTTTGCTCAATCATGCAAGACTTCAACATACAGAGGCAATGCCAACAACATTTCTCGGAAGAGGAGGTGGAATTACTTCCATTGATAGCAGTGTTAGAGTTGAGCAAAGAGCAAGAATTTCCCTTGGAGTGAGATTCAGAATGATGTTTAAGACTAAGGAGTCAGGTGTACGCAGATATTTGGGTACAATCACTAGGATTAGTGACTTGGATCCTCTTCCATGGAAAAAATTCAGTGGTGTAATCTTCAGtcaagttttgaattttgataggTTGGATGGGATGAATCAACAGCCTGTGAGCGCCCGAGTAGAGTTTCAATTTGGGTTATTGAACCAGTAG 534 0.3989 MLKQEVVSSGNNVGGGKAWILHGPYRELLYEPHADKPDVMSRSRHPCIYTFSGLIKGFSIRSQSFLLNHARLQHTEAMPTTFLGRGGGITSIDSSVRVEQRARISLGVRFRMMFKTKESGVRRYLGTITRISDLDPLPWKKFSGVIFSQVLNFDRLDGMNQQPVSARVEFQFGLLNQ 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0039 177 Pfam Auxin response factor 101 141 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ssu3g0039 177 Gene3D - 103 148 - -
Ssu3g0039 177 PANTHER AUXIN RESPONSE FACTOR 19 103 141 - -
Ssu3g0039 177 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 103 141 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0039 Ssu-Chr3 744128 748399 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0039 102 140 B3 DNA Binding Superfamily AT1G19220 69.231 1.14e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0039 - K14486 sly:100191131 67.781