Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0038 ATGCCTAGATCAACGGATCCTCTTGTTGTTGGACGTATAATTGGAGATGTTTTGGATCCTTTTACAAGTTGCGTCTCTCTGAGGGTAGCCTATAACAATTGCTCCGAGGTTATCAACTGTTGTGAGCTCAAATCCTCCCAAATCCTCAACCGACCAAGAGTTGAAGTTGGTGGAGATGACTTCACGACCTTTTACACCCTGGTAATGGTGGATACTGATGCACCTAGCCCAGGAAATCCAAATCAGAGGGAATATTTGCACTGGTTAGTAGTCAATATTCCAGGAGCTACAGGAGCAAACTTCGGTGAAGAGGTTGTGTGCTATGAAAGTCCACGACCGATGATAGGGATTCATCGTATTGTTTTCGTACTGTTTCGCCAGTCATGTAGACAAACTATATATGCTCCAGGATGGCGCCAAAATTTTAACACCAGAGATTTTAGCGAGGTTTCTAATCTTGGATTACCCGTTGCAGCAACGTACTTCAACTGTAAACGACAACATGATTCCGCTAGAGATGAAAGGCGGAgataa 534 0.4363 MPRSTDPLVVGRIIGDVLDPFTSCVSLRVAYNNCSEVINCCELKSSQILNRPRVEVGGDDFTTFYTLVMVDTDAPSPGNPNQREYLHWLVVNIPGATGANFGEEVVCYESPRPMIGIHRIVFVLFRQSCRQTIYAPGWRQNFNTRDFSEVSNLGLPVAATYFNCKRQHDSARDERRR 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0038 177 PANTHER PROTEIN, PUTATIVE-RELATED 5 175 - -
Ssu3g0038 177 SUPERFAMILY PEBP-like 12 166 IPR036610 -
Ssu3g0038 177 CDD PEBP_euk 25 164 IPR035810 -
Ssu3g0038 177 Gene3D - 2 172 IPR036610 -
Ssu3g0038 177 PANTHER PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN 5 175 IPR035810 -
Ssu3g0038 177 Pfam Phosphatidylethanolamine-binding protein 52 156 IPR008914 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0038 Ssu-Chr3 706584 711740 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0038 K16223 - gmx:100815541 317.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0038 3 706584 711740 Ssu8g2526 8 65200758 65209227 PCT