Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0023 ATGCCGGAGCTTCGTAGTGGACCTCGACGACGTCGTCCTCCGGTAGGTCGTAAAAGCTCGGAACCAGCGTCTCCAGCGGGGAAATACGTGAAGACTCGCGCTGCAGTCGCGAGGGAGGCAGCGGCGGCGGCGGAGAGGCCGAGAACTCGTTTGGCGGCGAAGAAATTAGAGGAGGAAAAACCGGTCATAGTGATATCTGATCACACCAAGAAAGAAGCTGAAGGCGCCATGGGAGATGAAAGCGGCGGCTTGAGCGCTAACAAAGGCGTCGCTCAAGAGGACGAGACCACTGCGGCTCCTTTTCCCGAAAGGGTACAAGTAGGAGGATCGCCGGTGTACAAGGTCGAGAGGAAACTGGGCAAAGGAGGGTTTGGACAGGTTTTTGTTGGCCGTAGAGTCACTGGCGGCAATGACCGCACCCCTGGTCCTGGTGCCACTGAGGTGGCTTTGAAATTTGAGCATAGAAACAGCAAAGGCTGTAACTATGGCCCTCCTTATGAGTGGCAAGTGTACAACACACTTGGTGGCAGTCATGGTATACCTAAGGTGCATTACAAAGGGAGGCAAGGAGAATATTACGTGATGGTTATGGACATGCTTGGTCCAAGCTTGTGGGATGTATGGAATTCCTCAAGCCAGACGATGTCTTCGGACATGGTTGCATGTATTGCTGTTGAGTCCCTGTCAATCTTGGAGAAGATGCATGCAAGAGGCTATGTGCATGGAGATGTAAAACCAGAGAACTTTTTACTAGGTCAGCCGGCTACAccacaagaaaagaaattgtttCTTGTAGACCTGGGTTTAGCAACAAAGTGGAGAGACACCTCCAGTGGGCAGCATGTGGAATATGATCAACGCCCTGATATGTTCAGagGGACTGTTCGATATGCCAGTGTTCATGCTCATTTGGGAAGAACTGCTAGTAGAAGGGATGATCTTGAATCTCTTGCATATACACTCATCTTCCTTCATAAAGGCCGGTTACCTTGGCAAGGTTATCagGGTGATAACAAATCCTTCCTTGTTTGCAAAAAGAAGATGGGAACATCTCCTGAGATGCTATGCTGTTTCTGCCCTGCTCCATTTAGGCAGTTCCTTGAGATTGTAGTGAACATGAAATTTGATGAAGAACCTAACTATTCCAGGCTAATATCTTTGTTTGATGGTATGCTTGGACCGAATCCTGCATCGAGGCCAATTAATACCGAAGGTGCACAAAAGGTTGGGCAGAAGAGAGGTAGATTGAATATTGAGGAAGAGGATGATTCACAGCCCAAAAAGAAGGTTCGTTTGGGGGTTCCTGCTACACAATGGATTTCAGTTTACAACGCAAGACTGCCAATGAAGCAAAGGTATCATTACAATGTAGCGGATGCAAGATTAGCGCAGCATGTGGAGAGAGGGATTGCTGATGGCCTTCTTATTAGTTGTGTGGCTTCTTGTTCCAATCTCTGGGCACTTATTATGGATGCTGGAACTGGTTTTTCCAGTCAAGTTTATAAGTTGTCACCATTTTTCTTACACAAGGAATGGATCATGGAACAGTGGGAGAAGAACTATTACATTACTTCTATTGCAGGGGCTAACAGTGGGAGCTCTCTTGTGGTGATGTCAAAAGGCACACAGTACACACAACAATCATACAAAGTAAGTGATTCATTCCCCTTCAAATGGATAAACAAGAAGTGGAGAGAAGGTTTTCATGTGACCTCAATGGCCACTGCTGGAAGTCGCTGGGGTGTTGTTATGTCTCGAAATGCTGGATTCAGTGATCAGGTTGTTGAACTTGATTTTCTCTATCCTAGTGAGGGAATTCACAGACGATGGGATAATGGTTATAGGATTACAGCAACTGCTGCTACATGGGATCAATCTGCTCTTATATTGAGCATTCCTAGGCGCAGGCCAGGAGATGAAACCCAGGAAACTTTGCGTACATCTCAATTTCCAAGCACACATGTTAAGGAAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACAGTATGCTGA 2028 0.4635 MPELRSGPRRRRPPVGRKSSEPASPAGKYVKTRAAVAREAAAAAERPRTRLAAKKLEEEKPVIVISDHTKKEAEGAMGDESGGLSANKGVAQEDETTAAPFPERVQVGGSPVYKVERKLGKGGFGQVFVGRRVTGGNDRTPGPGATEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKGRQGEYYVMVMDMLGPSLWDVWNSSSQTMSSDMVACIAVESLSILEKMHARGYVHGDVKPENFLLGQPATPQEKKLFLVDLGLATKWRDTSSGQHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDNKSFLVCKKKMGTSPEMLCCFCPAPFRQFLEIVVNMKFDEEPNYSRLISLFDGMLGPNPASRPINTEGAQKVGQKRGRLNIEEEDDSQPKKKVRLGVPATQWISVYNARLPMKQRYHYNVADARLAQHVERGIADGLLISCVASCSNLWALIMDAGTGFSSQVYKLSPFFLHKEWIMEQWEKNYYITSIAGANSGSSLVVMSKGTQYTQQSYKVSDSFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWDNGYRITATAATWDQSALILSIPRRRPGDETQETLRTSQFPSTHVKEKWSKNLYLACLCYGRTVC 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0023 675 CDD STKc_CK1 113 388 - -
Ssu3g0023 675 Gene3D Transferase(Phosphotransferase) domain 1 83 434 - -
Ssu3g0023 675 MobiDBLite consensus disorder prediction 1 47 - -
Ssu3g0023 675 ProSitePatterns Protein kinases ATP-binding region signature. 119 151 IPR017441 GO:0005524
Ssu3g0023 675 SMART serkin_6 113 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0023 675 ProSiteProfiles Protein kinase domain profile. 113 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0023 675 SUPERFAMILY Protein kinase-like (PK-like) 113 396 IPR011009 -
Ssu3g0023 675 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 71 646 - -
Ssu3g0023 675 MobiDBLite consensus disorder prediction 1 17 - -
Ssu3g0023 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Ssu3g0023 675 Pfam Protein kinase domain 113 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0023 675 PANTHER CASEIN KINASE-RELATED 71 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0023 Ssu-Chr3 447893 455730 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0023 100 270 EF-hand Containing Proteins AT4G36070 26.776 7.62e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Ssu3g0023 Pkinase 4.2e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0023 - - gmx:100803733 1281.16