Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0021 ATGGCATCAACATCTTGTGTGAAAGAGGTAGCTCCAGTTCCAATGTCTCAACCATATCCATCACCTCTTGCAAAATATAAGGATGTCGTGGCAAATCCCAAGCTCTTCATGTCTACCTTGGAGAAACTTCACTCTTCTATGGGCACTAAGTTCATGGTTCCTATCATTGGCGGAAAAGAACTAGATTTGTGTCGCCTCTTTATTGAAGTAACTTGCCGTGGAGGGATTGAGAAGCTTATTAAAGAAAGAAGATGGAAAGAAGTAACTGCAGTTTTCAATTTTCCATCAACAGCCACAAATGCTTCCTTTGTGCTGCGGAAATACTATTCTTCATTGCTTTACCACTATGAACAAATCTACTATTTTAAAGCCAATCAATGGACCCCTACAACTTCTGATGCTCTGCAGAATCAATCAACCACACCAGTTGTTCCTGCTCAAAGAGCACAATTTTCGCAGTCTTCTCCAGGAATTCATTCAGCTGCCTTTCAACAGTTAAGAGTTAATGCTGCTGAATTGCCTGAAGTGTCTTTCTCAGGATCTCCAGTGGTTGGAGTCATTGATGGGAAGTTTGAAAGTGGGTATCTAGTTTCTGTTTCAGTAGGTTCACAGATGCTCAAAGGCGTACTTTATGAGGCTCCACAAATCCCTGTGTTGCCTGCATCTGCACCACGTGGTCAAAACACTATAGTTATGAACAGCAATGCCAATGCCTCTGCATCAATGGGCGTTCCTCGTCGCCGTCGCAGGAAGAAATCagaaataaaaaggagagaTCCTGCTCATCCAAAACCAAACGGAAGTGGCTACAATTTCTTCTTTGCTGAGCAGCATGCAAGACTCAAGCAACTACACCATGGCAAGAACAGGGATATTAGTAGGATGATTGGTGAACTTTGGAACGAGTTAAAAGAGCCTGAAAAATCTGTTTATCAAGAGAAGGCTGTTAGAGATAAAGAGAGGTACAGAGCAGAAATGGAGGATTATCGTGAGAAACTGAAGATGGGCCGTGTTATCAGTGATGCTGTGCCGTTGCAACAACGGCTTCCTGAAGCGGATGCAGGCTTGGTTGATGTGGACGTAGAATTGGTAAGTTCTAAGGAGAGCAGTTCTGTTGGAAGTGAGTATGAAGATGTCAATATGGATGCTGAAACCACCTATGCGGGTCTGAACAAGGTCAAGGAGGGGGGTTATGAGCTATTTGGCCATTGCGAGAGAGAAAGGGATGCTGGAGTTCAAAAGATGATTGAGGACAAAAATATGCTGGCACTACTTTAG 1278 0.4296 MASTSCVKEVAPVPMSQPYPSPLAKYKDVVANPKLFMSTLEKLHSSMGTKFMVPIIGGKELDLCRLFIEVTCRGGIEKLIKERRWKEVTAVFNFPSTATNASFVLRKYYSSLLYHYEQIYYFKANQWTPTTSDALQNQSTTPVVPAQRAQFSQSSPGIHSAAFQQLRVNAAELPEVSFSGSPVVGVIDGKFESGYLVSVSVGSQMLKGVLYEAPQIPVLPASAPRGQNTIVMNSNANASASMGVPRRRRRKKSEIKRRDPAHPKPNGSGYNFFFAEQHARLKQLHHGKNRDISRMIGELWNELKEPEKSVYQEKAVRDKERYRAEMEDYREKLKMGRVISDAVPLQQRLPEADAGLVDVDVELVSSKESSSVGSEYEDVNMDAETTYAGLNKVKEGGYELFGHCERERDAGVQKMIEDKNMLALL 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0021 425 Gene3D High mobility group box domain 246 339 IPR036910 -
Ssu3g0021 425 CDD HMGB-UBF_HMG-box 263 327 - -
Ssu3g0021 425 CDD ARID_HMGB9-like 32 117 IPR045303 GO:0003677
Ssu3g0021 425 MobiDBLite consensus disorder prediction 238 269 - -
Ssu3g0021 425 Pfam ARID/BRIGHT DNA binding domain 34 117 IPR001606 GO:0003677
Ssu3g0021 425 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 9 379 - -
Ssu3g0021 425 SMART hmgende2 262 331 IPR009071 -
Ssu3g0021 425 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 263 330 IPR009071 -
Ssu3g0021 425 ProSiteProfiles ARID domain profile. 30 121 IPR001606 GO:0003677
Ssu3g0021 425 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 9 379 - -
Ssu3g0021 425 PRINTS High mobility group (HMG1/HMG2) protein signature 314 334 - -
Ssu3g0021 425 PRINTS High mobility group (HMG1/HMG2) protein signature 295 314 - -
Ssu3g0021 425 SMART ARID_2 27 117 - -
Ssu3g0021 425 Pfam HMG (high mobility group) box 263 330 IPR009071 -
Ssu3g0021 425 SUPERFAMILY HMG-box 251 334 IPR036910 -
Ssu3g0021 425 SUPERFAMILY ARID-like 29 130 IPR036431 GO:0003677
Ssu3g0021 425 SMART bright_3 31 122 IPR001606 GO:0003677
Ssu3g0021 425 Coils Coil 312 332 - -
Ssu3g0021 425 Gene3D - 24 139 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0021 Ssu-Chr3 423530 426994 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0021 1 363 ARID Transcription Factor Family AT1G04880 58.021 4.57e-132 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Ssu3g0021 ARID 4.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0021 - - mtr:MTR_7g005970 519.62