Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0019 ATGGCTTCATCTTTGGAGGAGCTTCTCGCAGAGGAGGGGTTCAAAGGAAGCAGAAGAGTGAGAAGGTCTAGATCCTCCTTCCACTATGGGGCTTCAAGTGAGCCTCTTTACTCTTTGGAAGGAAGATTTTGTGTGTCAAGTGAAAGAATTCGAACACAGAGAACAAAGTCTGATGCCTCACGATATCAAATCACAAGTGGACAGTTAAAAACTGACACTCATAATGCAATGAATCGGAGGTCAAGGGATAATGTTTTTTTGAGAGACAAAACGGATGAATGGTTGAAGAATGAAACTGAGAAGAACTCTTTCAGCGATACAGATTCTGGCAAAGCAATTGATACCAATTCATCAGAATACATGCCAAGGGATGAGATTACTGAGGTGATTGAGCAAGGAGCTAGCATAGTTAAAGATACTTATTCAAAAGAAGTGTCTGCAAAAAGAGGCAAAGAAAAGAGTTTCTATGAACTTGCGGAAGAGGAGAAATGGGGGGAAAAGCCTGTCAAGGATGTAAAGGTGCACAGCAGAAGTTCCAGTATGCATATGCTTAGAGACTCGAGTGAAACTGGAAAGAATATGAAACCCCAAAAAGACTCATACACTAGATCCAATAGCAAAAGCTTTGAATATGGCAGCAGGAATAAAAATAGCAATCATGCTATGCAAGCAGCTTCTAGTCTTGCTCTTGATGAAGTAGCTGTCCAAGCAGTAGTTTCCATTCTAAATGGATATATAAAGCGTTTTCCTAAAGATGAGGATTTTCGCTCTACATTGCGTCACAATTGTTTCTCCTCCCTGAATTTTATTGAACTGCAAGAAGAGAACATTACTAAGACCAAAGTCATAAGAAGTCTTGAGCAAGCAATTGAGACCATTGAACAAACTGCTGAGGAACCTATATCTGCCACGTATCTGAAAAGAACCATGATGCAGCTTAGCATTATTACAGGTTTGAGtttaaatgatttgaaatacGAATGTACGTGTGGGATCCCGAATTATAAGTTGTCAGCCTGTGCTCATCTTTACCTCGGTGTGGTATACATGatgcagaaaaaaaataaggtgtCAGCAAAGCATCTCTTGCAAGTGTTTTGTGATTCACCTTTTCAGGCACGGACTATATTGTTGCGTGAACTTTGGGAGCATCTATTTTCTCCACAATTTTCTCATCTGAAGGGATGGTACAACAAGGAAGCAGAAGTTCTAGTAGATACaccaagcaaaacaagaaaGCTAAAACTTCTTCAAAAAGTGTATAATGAACATTTGGATTCTGGAACTCATATATTTGCTGTATACTACAAAGATTGGCTCAGTGAAGGAGTAGAATCTCCACCTATTCCTTCAATTGGCATTCCGTCAGTTTTGGTCACAGGAAGTCGAGAGGGAAGTTCACTTGGTCATTCTTCTGAGTCTACTAGCTCCATTGATCCATTCTCTCCACAGCCAATGGTCAGCAAGAAACTGTATGATTCTATGTTTGGTAGCTCGAGTAAACCTGGAGTTTACCAAGTCAAAGATATTAAGGGTGATGATAACTTAGAGAAGTGTGTGAAAGGCTCTTATGGTTCAACTATTGATAAGCAGACATTAACATATGAGTCTGAAACTGTTAAATTTACAGATCAAGATATTGAAGATTTTGCTCAAGGTGTTGCAATTGATACAATCAAGCCTCCAAATAAGACAAGTTATGCTCTTGAAGGATCATATTTTCTAAGCGCTCCACGGGAATTTATTTGTCCTCTTACTGGAAATCTCTTTGAGGAACCAGTCACCCTAGAGACTGGTCAAACCTTTGAAAGAGAAGCCATCAAAGCTTGGTTTGAAAAGGGAAATAGAACATGCCCAGTAACAGGAAATACTTTGGAATGTGTGGCCATGCCATTTACCAACCTTATTTTGAAGCGTTTGATTGATAATTGGAAGTCAGAACGTTTTGATTACCTTCTTGATCTTGCTTCTCAAACAGTGGAGAATTCAGAGGAGCTTAAGTTGAAAAAGAGGGATGAGGCTGCCGTTTTCATGTTAGAGAGTCTTCTCTCCTCTTTGAAAGAAGAGGACAAATCAACTTATGCTAAGCATCTCATTGCTTTAGGAgttcttccatttctttttaggAGGTTTGAACAAGGACATGTGGAAGAAAAATCACAAGTTGTGTCACTCTTGCTAAATTGTATTCAAGTGGACTCTGGTTGCATATATCAGATAGCAAGGAGTGTTAACAGAAAATGTCTTCTTGAGCTTCTTCAAAGCAAGGAGGTTACCCCAACAACAAATGCAATGCTGTTCCTTACTGAACTTTTATCGATGAAGAGGAGAAAGGATGTCACTTCTTTCATAAGTGGCTTGGCGGGTGAAACagtattttatataatgcaTATTGTGCTCATATATCTCAAGAATTCTTCTCCATTTGAAAAGCCCCTAATTGCTGTCCTTTTGTTACACTTTGATCTGCTGGTTGAGCCTCAAAAGTTTAGCATATACAGAGAGGTTGCTGCGAATGCCATTGCAGAGGCTCTTGATGCCAGCTTAAATGATGAGAAGGCCCGAGAAAAGTGTTGCAGAGCACTTTTAATCTTGTGTGAACATTTTTCTTCTACTGGAAAGATACCAACCAAGACTAGCATCTTAAAACAAGCAGGTTATAATAATGATAGCGTAGAATTGAAACCTCCTGGCCATGAAGAAGAGGGTCAGCAGTCAGATGTAATTATTTCATTGgaagatgaagaaaaaaggGATGAAGAGTTGCTAGGGAACCTTCTAGAGTCGTTGGTTGGTGACGGAGAAAGCCCATTTTTGAAGAGCATATCTAGATGTTTAGATTCTAAGCACCCAGATTTGGTGAGGATGTGTCTAGTAACTGTGACATGGTTGAGCTCCTCACTATGTATGCTATTTAGTGCTGGATTGCATCTTCCCGCCTTCTTATCCATCATCTCTCAGTTGAAAGGAATCCTGGAAAATGGAGAACTTGAGCTCAAGACTCTTGCTTCTTCGTCTTTGCTTAACTTCCGTAAAATATCAGGATGA 3048 0.3855 MASSLEELLAEEGFKGSRRVRRSRSSFHYGASSEPLYSLEGRFCVSSERIRTQRTKSDASRYQITSGQLKTDTHNAMNRRSRDNVFLRDKTDEWLKNETEKNSFSDTDSGKAIDTNSSEYMPRDEITEVIEQGASIVKDTYSKEVSAKRGKEKSFYELAEEEKWGEKPVKDVKVHSRSSSMHMLRDSSETGKNMKPQKDSYTRSNSKSFEYGSRNKNSNHAMQAASSLALDEVAVQAVVSILNGYIKRFPKDEDFRSTLRHNCFSSLNFIELQEENITKTKVIRSLEQAIETIEQTAEEPISATYLKRTMMQLSIITGLSLNDLKYECTCGIPNYKLSACAHLYLGVVYMMQKKNKVSAKHLLQVFCDSPFQARTILLRELWEHLFSPQFSHLKGWYNKEAEVLVDTPSKTRKLKLLQKVYNEHLDSGTHIFAVYYKDWLSEGVESPPIPSIGIPSVLVTGSREGSSLGHSSESTSSIDPFSPQPMVSKKLYDSMFGSSSKPGVYQVKDIKGDDNLEKCVKGSYGSTIDKQTLTYESETVKFTDQDIEDFAQGVAIDTIKPPNKTSYALEGSYFLSAPREFICPLTGNLFEEPVTLETGQTFEREAIKAWFEKGNRTCPVTGNTLECVAMPFTNLILKRLIDNWKSERFDYLLDLASQTVENSEELKLKKRDEAAVFMLESLLSSLKEEDKSTYAKHLIALGVLPFLFRRFEQGHVEEKSQVVSLLLNCIQVDSGCIYQIARSVNRKCLLELLQSKEVTPTTNAMLFLTELLSMKRRKDVTSFISGLAGETVFYIMHIVLIYLKNSSPFEKPLIAVLLLHFDLLVEPQKFSIYREVAANAIAEALDASLNDEKAREKCCRALLILCEHFSSTGKIPTKTSILKQAGYNNDSVELKPPGHEEEGQQSDVIISLEDEEKRDEELLGNLLESLVGDGESPFLKSISRCLDSKHPDLVRMCLVTVTWLSSSLCMLFSAGLHLPAFLSIISQLKGILENGELELKTLASSSLLNFRKISG 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0019 1015 MobiDBLite consensus disorder prediction 463 482 - -
Ssu3g0019 1015 PANTHER OS04G0584500 PROTEIN 1 545 - -
Ssu3g0019 1015 MobiDBLite consensus disorder prediction 194 218 - -
Ssu3g0019 1015 ProSiteProfiles Zinc finger SWIM-type profile. 313 351 IPR007527 GO:0008270
Ssu3g0019 1015 Pfam U-box domain 577 647 IPR003613 GO:0004842|GO:0016567
Ssu3g0019 1015 SMART Ubox_2 580 644 IPR003613 GO:0004842|GO:0016567
Ssu3g0019 1015 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 576 651 IPR013083 -
Ssu3g0019 1015 MobiDBLite consensus disorder prediction 57 74 - -
Ssu3g0019 1015 PANTHER OS04G0584500 PROTEIN 562 1014 - -
Ssu3g0019 1015 MobiDBLite consensus disorder prediction 54 74 - -
Ssu3g0019 1015 SUPERFAMILY ARM repeat 634 1011 IPR016024 -
Ssu3g0019 1015 MobiDBLite consensus disorder prediction 170 193 - -
Ssu3g0019 1015 PANTHER OS04G0584500 PROTEIN 1 545 - -
Ssu3g0019 1015 ProSiteProfiles U-box domain profile. 576 651 IPR003613 GO:0004842|GO:0016567
Ssu3g0019 1015 MobiDBLite consensus disorder prediction 170 218 - -
Ssu3g0019 1015 CDD RING-Ubox_PUB 581 622 IPR045210 -
Ssu3g0019 1015 PANTHER OS04G0584500 PROTEIN 562 1014 - -
Ssu3g0019 1015 SUPERFAMILY RING/U-box 572 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0019 Ssu-Chr3 362963 372242 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0019 574 785 U-box Gene Family AT1G68940 28.926 1.14e-13 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0019 - - gmx:100820501 1597.41