Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0016 ATGAGAGCGATAAGGCACCACCTTTCACTGCTCAATTGGAGGCTTACTAGCCCAATATCTCTTTTGTCTGTAAGAAATACTTATATCATGTCAGAATCAGATCATTCCTCTGCTTTTAACACACCCAGATTGGTTCTCAAGAAGGTTTTGGCCAAATCTCAACATGAAGGGGATGGAGCTGTTGTTAGAAGAGGCATTGGAAGGAGCGAGTTGAAGAACTTGGATCCTTTCCTAATGTTGGATCACTTCTCAGTGTCTCCCCCCGGAGGATTTCCTGATCATCCACACAGAGGTTTTGAGACCGTCACATACATGTTAGAGGGAGGCATAACTCACCAAGATTTTGCTGGGCACAAGGGTACAATAAGAACCGGTGATGTTCAGTGGATGACTGCAGGGAGGGGAATAATTCACTCTGAAATGCCCGCAGAAGCAAACAACAAGGGATTGCAACTATGGATCAATTTATCGGCCAGGGAGAAAATGATCGAACCTAACTACCAAGAGCTTCCAAGTGAGAACATACCGAGAGCAGAAAAAGATGGGGTTGAAGTGAGAGTGATAGCAGGAGAAGCAATGGGAGTGCATTCGCCTGTGTACACACGAACGCCAACCATGTTCCTTGTTTTCTCCATGATGCCCGGAACTGAGTGGCATCAGAGCATTCCAGAGTCGTGGAATGCCtttgtttatgtaattgaaGGGGAAGGAGTTTTTGGGTGTCCAAGTTCACCCTCAACTGTGCCACATCATGTCCTGGTTTTGAGTCTAGGCGATGGCCTTAGCGTATGGAATAACTCTTCAAAGCCTTTGAGGTTTGTTCTGATAGGAGGACAACCACTTAACGAGCCAGTGGCTCAGTATGGGCCTTTTGTCATGAATACACAGTCTGAGATTGAGAAAACTATTGAAGACTATCAATATGGCAGGAATGGCTTTGAGATGAGCAAGCATGGGAGGTCtcaatag 969 0.4499 MRAIRHHLSLLNWRLTSPISLLSVRNTYIMSESDHSSAFNTPRLVLKKVLAKSQHEGDGAVVRRGIGRSELKNLDPFLMLDHFSVSPPGGFPDHPHRGFETVTYMLEGGITHQDFAGHKGTIRTGDVQWMTAGRGIIHSEMPAEANNKGLQLWINLSAREKMIEPNYQELPSENIPRAEKDGVEVRVIAGEAMGVHSPVYTRTPTMFLVFSMMPGTEWHQSIPESWNAFVYVIEGEGVFGCPSSPSTVPHHVLVLSLGDGLSVWNNSSKPLRFVLIGGQPLNEPVAQYGPFVMNTQSEIEKTIEDYQYGRNGFEMSKHGRSQ 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0016 322 PIRSF Pirin 41 320 IPR012093 -
Ssu3g0016 322 Gene3D Jelly Rolls 56 307 IPR014710 -
Ssu3g0016 322 PANTHER PIRIN-RELATED 35 322 IPR012093 -
Ssu3g0016 322 PANTHER PIRIN-LIKE PROTEIN 35 322 - -
Ssu3g0016 322 Gene3D Jelly Rolls 176 281 IPR014710 -
Ssu3g0016 322 Pfam Pirin 63 154 IPR003829 -
Ssu3g0016 322 Pfam Pirin C-terminal cupin domain 208 312 IPR008778 -
Ssu3g0016 322 SUPERFAMILY RmlC-like cupins 43 318 IPR011051 -
Ssu3g0016 322 CDD cupin_pirin_C 204 280 - -
Ssu3g0016 322 CDD cupin_pirin_N 60 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0016 Ssu-Chr3 337757 339370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0016 40 317 Calmodulin-binding Proteins AT3G59220 63.929 1.90e-132 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0016 K06911 - gmx:100775597 575.089