Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0011 atggatgatgTGATGACGAGTAAGAAGGGGAAAGGAAACAAGAAAGGTGGGCTGATCACCAAAACATGGGAGCGATGCAAGTCCATAGGACGAGGGCGGAAGGTAACTACTGGGACTCTGAGGAGCAAATCCTGGCCTAGCCTCGACCggtcaaattcaaacaaaagcAGTGTGGCCCCCGAAGGTTGCTTCTCCGTCTACGTTGGCCCCCAAATGCAAAGGTTCGTCATCAAAACCGAGTACGCAAACCACCCCTTGTTCAAGATGTTGCTCGAAGAAGCAGAGTCCGAATATGGTTACAACAGCCAGGGCCCTTTGGCCCTTCCCTGCGACGTTGATATCTTTTACAAGGTCTTGATGGAAATGGATTATGAAGAAACTCGTCAAGGCTGTGCCTGTGTTAAGCGTTCTCCCTCTGCTTATCATCTTCTTCGCCGCTCCCCACTGCTTGCCATAAACCACTTCTGA 468 0.4786 MDDVMTSKKGKGNKKGGLITKTWERCKSIGRGRKVTTGTLRSKSWPSLDRSNSNKSSVAPEGCFSVYVGPQMQRFVIKTEYANHPLFKMLLEEAESEYGYNSQGPLALPCDVDIFYKVLMEMDYEETRQGCACVKRSPSAYHLLRRSPLLAINHF 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0011 155 Pfam Auxin responsive protein 42 119 IPR003676 GO:0009733
Ssu3g0011 155 PANTHER OS02G0305950 PROTEIN 16 132 - -
Ssu3g0011 155 MobiDBLite consensus disorder prediction 40 59 - -
Ssu3g0011 155 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 16 132 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0011 Ssu-Chr3 268439 268906 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0011 10 119 Calmodulin-binding Proteins AT4G34750 33.913 3.45e-18 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0011 K14488 - gmx:100777217 241.506