Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0010 ATGGGTTGCTTCTCGTGTTTCGATTCGAGTTCGAGGGAGGATCACAGCCATCGTCCTCGTAGTCAGCGGCACCAACCCAATCTACCTCTCCCTTCTCATATTTCCAGATTGCCCTCTGGAGCAGACAAGTTACGGTCGAGAAGTAATGGAAGGGAACTGCCTCCTCCCAAGGATGGACATGGACATGGACCCGCTGTCCAAATTGCTGCTCAAACTTTTACTTTCCGTGAACTTGCAGCTGCAACAAAAAACTTTAGGCCGGAGTCCTTTGTAGGGGAAGGTGGTTTTGGAAGGGTGTACAAAGGCAGGCTAGAAAGCACTGGTCAGATTGTTGCTGTCAAACAGTTAGACAAAAATGGTCTTCAGGGTAATAGGGAATTCCTTGTGGAGGTTCTCATGCTCAGTCTTCTACATCACCCTAACCTTGTGAATCTCATCGGATACTGTGCGGATGGGGATCAACGCCTTCTTGTTTATGAATTTATGCCTTTGGGATCATTGGAAGATCACCTTCATGATCTTCCCCCTGATAAGGAACCATTAGATTGGAACACTAGAATGAAAATAGCTGCTGGTGCTGCAAAAGGATTAGAATACCTTCATGATAAGGCAAATCCTCCTGTCATTTACAGAGACTTCAAATCATCTAACATATTACTTGATGAAGGATACCACCCAAAGCTTTCTGACTTTGGTCTTGCAAAGCTTGGTCCTGTTGGTGACAAATCACACGTTTCTACCCGTGTCATGGGAACTTATGGTTACTGTGCTCCTGAGTATGCTATGACTGGACAGCTGACTGTGAAGTCTGATGTATATAGTTTTGGGGTTGTCTTCTTAGAGCTGATTACTGGCCGTAAAGCAATTGACAGCACGCAGCCCCATGGAGAACAGAATCTTGTCACATGGGCACGTCCACTTTTTAACGACCGCAGGAAGTTTTCAAAGTTGGCCGATCCCAGGCTGCAGGGGCAGTTTCCCATGCGGGGTCTTTACCAGGCTCTAGCTGTGGCATCAATGTGCATTCAAGAATCAGCTGCGACACGTCCCCTGATTGGAGATGTGGTGACAGCCCTCTCTTATCTGGCCAACCAGGCATATGACCCCAACAATGCTGGACATGGTTATAGGGGGTCAAGTGATGATAAAAGGAACAGAGACGATAAAGGCGGAAGAATATTGAAAAATGATGAAGCTGGGGGATCTGGACGCAGATGGGACTTGGAAGGGTCCGAGAAAGATGACTCCCCACAAGAAACTGCAAGGATGTTAAACAGAGATCTAGAAAGACAACGTGCTGTGGCTGAAGCCAAGATGTGGGGAGAGAACTTGAgacaacaaagaaaacaaagtgTGCAGCGGGGCAGTTTTGATGGTTCTAACGCTTAG 1389 0.4644 MGCFSCFDSSSREDHSHRPRSQRHQPNLPLPSHISRLPSGADKLRSRSNGRELPPPKDGHGHGPAVQIAAQTFTFRELAAATKNFRPESFVGEGGFGRVYKGRLESTGQIVAVKQLDKNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDFKSSNILLDEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSTQPHGEQNLVTWARPLFNDRRKFSKLADPRLQGQFPMRGLYQALAVASMCIQESAATRPLIGDVVTALSYLANQAYDPNNAGHGYRGSSDDKRNRDDKGGRILKNDEAGGSGRRWDLEGSEKDDSPQETARMLNRDLERQRAVAEAKMWGENLRQQRKQSVQRGSFDGSNA 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0010 462 MobiDBLite consensus disorder prediction 370 423 - -
Ssu3g0010 462 Gene3D Phosphorylase Kinase; domain 1 69 161 - -
Ssu3g0010 462 PANTHER SERINE/THREONINE-PROTEIN KINASE PBS1 1 454 - -
Ssu3g0010 462 MobiDBLite consensus disorder prediction 444 462 - -
Ssu3g0010 462 CDD STKc_IRAK 91 359 - -
Ssu3g0010 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Ssu3g0010 462 ProSiteProfiles Protein kinase domain profile. 85 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0010 462 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524
Ssu3g0010 462 MobiDBLite consensus disorder prediction 377 423 - -
Ssu3g0010 462 Pfam Protein kinase domain 88 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0010 462 Gene3D Transferase(Phosphotransferase) domain 1 162 376 - -
Ssu3g0010 462 PANTHER OS07G0668900 PROTEIN 1 454 - -
Ssu3g0010 462 MobiDBLite consensus disorder prediction 439 462 - -
Ssu3g0010 462 SUPERFAMILY Protein kinase-like (PK-like) 70 357 IPR011009 -
Ssu3g0010 462 MobiDBLite consensus disorder prediction 1 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0010 Ssu-Chr3 247065 251857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0010 1 441 Glycoside Hydrolase AT3G07070 55.338 6.28e-168 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Ssu3g0010 Pkinase 5.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0010 K13430 - gmx:100305422 828.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0010 3 247065 251857 Ssu3g0010 3 247065 251857 ECH