Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0008 ATGGAGAAGCTGAATTTTGTGAAGAATGGGGAGCTTAGGTTGCCACCGGGGTTCCGTTTCCACCCGACTGATGAGGAACTTGTTGTGCAATACTTGAAGCGTAAGGTCTTCTCCTGCCCTTTGCCAGCCTCTATCATCCCTGAGGTTGACGTTTGCAGGTCTGATCCTTGGGATTTGCCAGGTGATTTGGAGCAAGAGAGGTACTTCTTCAGCACCAAAGAGGCCAAATATCCTAACGGGAATCGCTCCAACAGAGCCACCAATTCAGGTTATTGGAAGGCAACTGGGTTGGACAAACAAATCGTAACTTCCAAAGGGAACCAAGTTGCGGGGATGAAGAAGACACTTGTTTTCTACAGAGGCAAGCCCCCTCATGGGTCCAGAACTGATTGGATCATGCATGAATATCGCCTCCTTAACGCAGCCACTTGCTCTCAGTCTCCGAGCCCTGTGGTTCCCATGGAAAATTGGGTTCTATGTCGCATATTTTTGAAGAGGAGAAGTGGTGCTAAAAATGGGCAGGACATGGACACTTTGAGACCCAGCCTTGATAACATTAACGTTAGCCGCAAGGTGAGGAACTCTAGGGTGGTTTTCTATGACTTCTTGGCGCAGAACAAGACTGATTCCTCATCCTCGGGAGCCAGCGGAATTACAGAGGTTTCCACCCATGAATCAGATGAACATGAAGAGAGCAGTAGCTCCAACAGCTTCccttattttagaagaaaacctTAG 738 0.4729 MEKLNFVKNGELRLPPGFRFHPTDEELVVQYLKRKVFSCPLPASIIPEVDVCRSDPWDLPGDLEQERYFFSTKEAKYPNGNRSNRATNSGYWKATGLDKQIVTSKGNQVAGMKKTLVFYRGKPPHGSRTDWIMHEYRLLNAATCSQSPSPVVPMENWVLCRIFLKRRSGAKNGQDMDTLRPSLDNINVSRKVRNSRVVFYDFLAQNKTDSSSSGASGITEVSTHESDEHEESSSSNSFPYFRRKP 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0008 245 SUPERFAMILY NAC domain 10 165 IPR036093 GO:0003677|GO:0006355
Ssu3g0008 245 MobiDBLite consensus disorder prediction 207 245 - -
Ssu3g0008 245 Gene3D NAC domain 23 169 IPR036093 GO:0003677|GO:0006355
Ssu3g0008 245 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 244 - -
Ssu3g0008 245 PANTHER NAC DOMAIN-CONTAINING PROTEIN 83-LIKE 1 244 - -
Ssu3g0008 245 Pfam No apical meristem (NAM) protein 15 138 IPR003441 GO:0003677|GO:0006355
Ssu3g0008 245 MobiDBLite consensus disorder prediction 207 221 - -
Ssu3g0008 245 ProSiteProfiles NAC domain profile. 14 165 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0008 Ssu-Chr3 177914 178913 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0008 1 238 NAC Transcription Factor Family AT5G13180 58.915 3.13e-101 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu3g0008 NAM 1.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0008 - - gmx:100170709 384.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0008 3 177914 178913 Ssu3g0008 3 177914 178913 ECH
Ssu3g0008 3 177914 178913 Ssu1g2416 1 67430494 67431944 ECH
Ssu3g0008 3 177914 178913 Ssu5g2984 5 76788747 76790687 ECH