Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3187 atgtttggattgTCTTCTTCTGGAACCCACTCCCAATTACTCTCAAATGCCTTCATGGATGTAGCTGAAAAGGACAGCCCCTCGAAGGGGAAGAGAGGTAGGACAGCAAAGAAGGAAAAGATGGTGGAATTCAGGCCAGCTGATGCTCGAAAGCAAACGAAACAGAGATGGCTGGGCATTGTCATTGATGATCTATCTAATACTACTCAACCTCACTTAACTGCTTACCAACGTGCAAAAGAGGTTCAAGCTAACCTATCTCCTCAATTCCCAAGCCTTCTCAAGCCCATGCTTCCATCTCATGTAACCGGAGGATTTTGGCTAGGTCTTCCCACAAAATTCTGTCAGTTGCATATGCCCAAGGTTGATACTGTCATTGCTTTGGAAGTTGAAAGTGGGCAAGTATATGAAACCAAATATCTTGCTCACAAGACGGGCTTAAGTGGTGGATGGAAGGGGTTTTCCGTAGCTCATAACTTACTTGAGATGGATGTTTTAATATTCCACTTGGTCCAACCTTCCAAGTTTAAGGTGTACATTATAAGATCTCAGGGATCCGATGAACTGGATGGTGCTCTTGGCCTTCTTAAGTTAGATGAGCGCAGAAAACAAAGGAATGAAGTGAATGGTGCTCTTGGTGAGTGTGATGCTACTCAAGGAAATGATCCTAAGAATAGTGGGATGATTTTTGGTGCTAATGTACCTCAATCAGATCAGGTTGAAAATACTAGTAAAGATTTTGACTCTGGAATTAGATTTTCAGAATCTGTTGTCAGTTTCAAGCAAGTGACTGGTGTGGAGAATTTCAGCATTGTGGTGAATGGTTTGGTCATTGATTCAGAGCTCTCCAAATATGATCGGAGCAAGTATTATGAGCTGTGTTGCAGCCAGAGGTCGTCTCTTCATGACCATCTTCTTGAGGGTCTTAACTCTAAACTGGCGGCTGGAATAATTTCTGAGACCATTAATATTGCCGATGCCATTAAGGCCAGCAAGCTTACAATCTCTCCAAATAGTTTTGTCATATGGGACAAAACTTTGAAAGCCTTCGAGGCCATGGGTATGAATGTCGGTTTCTTGCTTATTCGGCTACACCAGCTCATGAAACTAGCTTTGAAATTGAAGAGGTACAAAGAGGTAATACGTGAAAGGGACCGTGCTGAAGAGGAGTTGAAAGCTCTAGAAGCAAAACTAGTGCAAGTAAAACAAACCATAAATAGACTTAGATCAAGAGAATGA 1239 0.4189 MFGLSSSGTHSQLLSNAFMDVAEKDSPSKGKRGRTAKKEKMVEFRPADARKQTKQRWLGIVIDDLSNTTQPHLTAYQRAKEVQANLSPQFPSLLKPMLPSHVTGGFWLGLPTKFCQLHMPKVDTVIALEVESGQVYETKYLAHKTGLSGGWKGFSVAHNLLEMDVLIFHLVQPSKFKVYIIRSQGSDELDGALGLLKLDERRKQRNEVNGALGECDATQGNDPKNSGMIFGANVPQSDQVENTSKDFDSGIRFSESVVSFKQVTGVENFSIVVNGLVIDSELSKYDRSKYYELCCSQRSSLHDHLLEGLNSKLAAGIISETINIADAIKASKLTISPNSFVIWDKTLKAFEAMGMNVGFLLIRLHQLMKLALKLKRYKEVIRERDRAEEELKALEAKLVQVKQTINRLRSRE 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3187 412 Gene3D - 73 185 IPR015300 -
Ssu2g3187 412 MobiDBLite consensus disorder prediction 24 39 - -
Ssu2g3187 412 CDD B3_DNA 91 182 IPR003340 GO:0003677
Ssu2g3187 412 Pfam B3 DNA binding domain 94 183 IPR003340 GO:0003677
Ssu2g3187 412 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0234100 41 366 - -
Ssu2g3187 412 SMART B3_2 93 184 IPR003340 GO:0003677
Ssu2g3187 412 MobiDBLite consensus disorder prediction 19 39 - -
Ssu2g3187 412 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 41 366 IPR044837 -
Ssu2g3187 412 ProSiteProfiles B3 DNA-binding domain profile. 93 184 IPR003340 GO:0003677
Ssu2g3187 412 Coils Coil 370 411 - -
Ssu2g3187 412 SUPERFAMILY DNA-binding pseudobarrel domain 86 183 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3187 Ssu-Chr2 94228645 94230834 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3187 73 182 B3 DNA Binding Superfamily AT3G19184 51.818 6.81e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu2g3187 B3 2.1e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3187 - - ccaj:109816480 545.814