Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3186 atggaggaagaggaagatgaaGTGGTTTggtgttcttcttcttctgattCGGGCGACGATGATATCGAAGAGCGGAAATCGCAGAATGTGGATGCCCTGGTCAGGGGCAACCTCATCGTGAAGAGACAATCGTTGCTACCGCGACTTCTATCAGTATCGCAAGGAGCGGCTGTTTGTAGAAAACCCTTTAAGCCTCCATGCTCTAAATCTGATACTTGCGGTTACAATCAAGACCTCACTCGTAGGCTTTCTGCTCGCAAAAGGTTTGTTCCGTGGGGTTCTTCCTCTTCTATTCCTAGACCTGCGTTGGAGGAGTTGAAATTGAATGTACCAGTAACTGAAAGCCATGTTGATGTTGCTGAGGAGGAGAAACCATCTTTGCCCCCGGGGATTGATCCTCTAGTATTGTGGCACCCTCAACCTCAAGAGTATGAGGATGACCCTTCTAATGCTAATTTGACCACGATAGCAGTTGACCCGTTGCTTGTTCGTTACCTTCGTCCACATCAGAGAGAAGGGGTTCAGTTCATGTTTGATTGTGTCTCAGGGCTCTGTACCACACCAAATATACATGGATGCATTTTGGCGGATGATATGGGTTTGGGGAAGACATTGCAGTCGATCACATTACTCTATACTCTAATTTGTCAAGGGTTTGATGGCAAGCCAATGGTTCGAAAGGCCATCGTTGTGACTCCTACCAGCCTTGTCAGCAATTGGGAAGCTGAAATCAAGAAGTGGGTTGGAGAAAGAATTCATCTTGTTGCTCTATGTGAAAGCACAAGAGAAGATGTTGTCTTTGGGATTGACAATTTTACAAGTCCCCAAAGCAATTTACAGGTGCTCATTGTTTCATATGAGACATTCCGAATGCATTCCTCAAAGTTTAGCTCTAGTGACTCATGTGACCTTCTCATATGTGATGAGGCTCACAGACTGAAAAATGATCAAACAATAACGAACCGGGCATTGGCAGCTCTCCCTTGCAAACGTAGAATTTTGTTGTCAGGAACTCCTTTGCAAAATGACTTAGAAGAATTCTTTGCAATGGTTAACTTTACTAATCCTGGAATATTGGGTGATATTGCACATTTTCGACGTTACTATGAGGCACCGATTATTTGTGGAAGAGAACCTGCTGCCACTGCAGAAGAGAATAAGCTAGGTGCTGAACGCTGTACTGAATTAAGTGTTAAAGTTAATCGGTTCATATTAAGAAGGACTAATGCATTGTTATCAAATCACTTGCCACCTAAGATAGTTGAAGTTGTTTGCTGCAAGTTGACTCCACTACAGTCAGAcctatataaacattttatacaaTCCAAAAATGTTAAGCGGGCAATTACTGAAGAAGTGAAGCAATCAAAGATTTTGGCCTACATAACAGCTCTCAAAAAGTTGTGTAATCATCCAAAGCTTATCTATGATACCATACGAAGTGGGAGTCCGGGAACTTCAGGTTTTGAGGACTGTATCCGATTCTTCCCTCCTGAAATGTTATCTGGAAGGTCTGGCTCATGGTCGGGAGGGCATGGAGCGTGGGTTGAGCTATCTGGGAAAATGCATGTCTTAGCAAGATTACTTGCTCATTTGCGTCAGAGAACAAATGACCGGATTGTCCTTGTCTCAAACTACACTCAGACTCTTGATCTTTTTGCTCAATTGTGTCGGGAAAGAAGGTATCCTCACTTGAGGCTTGATGGCACTACATCAATCAGTAAAAGGCAAAAGTTGGTCAACTGCTTTAATGATCCATCCAAGGACgaatttgtttttctcttgaGCAGCAAGGCTGGTGGTTGTGGACTCAATTTGATTGGTGGAAATCGACTTGTCTTGTTTGATCCTGATTGGAATCCAGCAAATGATAAACAAGCTGCAGCAAGAGTATGGAGGGATGGACAGAAGAAAAGAGtttatatttatagatttttgagTGCCGGAACAATAGAAGAAAAGGTCTACCAGCGGCAGATGTCAAAAGAAGGGCTGCAAAAGGTCATTCAGCAGGAGCAAACTGATAGCCTTGTGGCACAGGTCGAAATTGCTGCTTCTCCCATGTGTTCTAGTTGA 2076 0.4176 MEEEEDEVVWCSSSSDSGDDDIEERKSQNVDALVRGNLIVKRQSLLPRLLSVSQGAAVCRKPFKPPCSKSDTCGYNQDLTRRLSARKRFVPWGSSSSIPRPALEELKLNVPVTESHVDVAEEEKPSLPPGIDPLVLWHPQPQEYEDDPSNANLTTIAVDPLLVRYLRPHQREGVQFMFDCVSGLCTTPNIHGCILADDMGLGKTLQSITLLYTLICQGFDGKPMVRKAIVVTPTSLVSNWEAEIKKWVGERIHLVALCESTREDVVFGIDNFTSPQSNLQVLIVSYETFRMHSSKFSSSDSCDLLICDEAHRLKNDQTITNRALAALPCKRRILLSGTPLQNDLEEFFAMVNFTNPGILGDIAHFRRYYEAPIICGREPAATAEENKLGAERCTELSVKVNRFILRRTNALLSNHLPPKIVEVVCCKLTPLQSDLYKHFIQSKNVKRAITEEVKQSKILAYITALKKLCNHPKLIYDTIRSGSPGTSGFEDCIRFFPPEMLSGRSGSWSGGHGAWVELSGKMHVLARLLAHLRQRTNDRIVLVSNYTQTLDLFAQLCRERRYPHLRLDGTTSISKRQKLVNCFNDPSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQQEQTDSLVAQVEIAASPMCSS 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3186 691 Pfam SNF2-related domain 169 475 IPR000330 GO:0005524|GO:0140658
Ssu2g3186 691 CDD DEXHc_RAD54 166 407 - -
Ssu2g3186 691 PANTHER SNF2/RAD54 FAMILY MEMBER 30 673 - -
Ssu2g3186 691 Gene3D - 407 667 IPR027417 -
Ssu2g3186 691 CDD SF2_C_SNF 518 646 - -
Ssu2g3186 691 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 524 682 IPR001650 -
Ssu2g3186 691 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 411 672 IPR027417 -
Ssu2g3186 691 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 184 357 IPR014001 -
Ssu2g3186 691 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 407 IPR027417 -
Ssu2g3186 691 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 30 673 - -
Ssu2g3186 691 Gene3D - 139 406 IPR038718 -
Ssu2g3186 691 MobiDBLite consensus disorder prediction 1 26 - -
Ssu2g3186 691 Pfam Helicase conserved C-terminal domain 526 634 IPR001650 -
Ssu2g3186 691 Gene3D - 429 676 - -
Ssu2g3186 691 SMART helicmild6 551 635 IPR001650 -
Ssu2g3186 691 SMART ultradead3 162 365 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3186 Ssu-Chr2 94210223 94216028 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3186 515 678 RAD5 or RAD16-like Gene Family AT5G43530 36.364 8.20e-23 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ssu2g3186 SNF2_N 1.5e-53 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3186 K10875 - gmx:100781631 1212.21