Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3183 ATGGGAACCAAGTACATGTGCGctttattattgttagtatCTGCTTTATTGCTTCACTCATTTTCTGAAATTGTGTTAGGAAGTGGCGACGGTTATGGTTATGGCCCAGCAAAGTGTGCCCCTAAGTGtcaaccacctccacctccacctccacctccgtCTAGTTGTCAGCCGACACGGTTGCAGAGAGCTGGCAAAGCGCTTCTAAAATTCACTCGTTCTGTTGATGACCCAAATGGATATACGAGTAACTGGAAGGGTGCCGACACTTGTAAATTCAAGGGGGTGCGATGTGCCGCATATCCAAACTCAAATGAGCAAGCAGTTGCGGGAATAGACCTGAATGGAGCTGGGCTCTCTGGGAAAAAAGGTACACCGCTCATCTTCTCAGGCATCTTGGACAGGATACCGGAGCTCACATTCTTCCACGTCAACTCCAACAACTTCACCGGTGCCGTCCCAACTGACATCACCAAGTACAACTATTTCTACGAGTTAGACCTCAGTAACAACAAGGCGGAGGGCGAGTTTCCAAAGGAAGTGCTTGAGTCCAAGCAGCTGGTGTTCTTGGACCTCCGGTTCAACCGTCTTTCCGGCTCAATTCCACCACAACTGTTTCAGTTGGATCTGGATGTCATTTTCATCAACAACAATCAATTCAGTGGCAATCTGCCCGATAACTTTGGGTCCACACCGGCCAGGTTCCTCACTTTTGCCAACAACCAACTCACGGGTCCAATCCCCAGCAGCATTGGCCAAGCTTCCAAAACCCTCACCGAGGTGCTCTTCTTGGGCAACCAATTTGACGGCTGCTTGCCCTACCAAATTGGGTACCTCAAAAAGGCCACCGTCTTTGATGTCAGCAAAAACTGCTTAACGGGTCCCATCCCACACTCCTTTGCCTGCTTGGAAAGCATTCAGTACTTGAACTTGGAGCACAACCAGTTTTACGGAGAAGTTCCAGAGATGGTGTGTCAGCTGCCAGGGCTCTGCAACAAAGGCAACTTCTCCCTATCGGACAACTATTTCACTCAGGTTGGTCCTGCATGCAGGGACCTCATCATGAAAAATGTGCTGGACGTGAGCAACAATTGCATCCTCGGCCTTCCAAATCAGAGGCCGCACGGACAATGCTCCGAATTTTTCTCCAACGTCAAGCCCTGCCCAAATCCCAAGTATCTCCATTACGTCCCTTGTAAAGGATACTACCCCCACATCCACACCGCCGCCGTGCCCGCTCCTCCGCTCACTTACAACTCACTCAACCCTCATCGCTACTCAACTTCTCGTCCATCCAGGCATTAA 1305 0.4835 MGTKYMCALLLLVSALLLHSFSEIVLGSGDGYGYGPAKCAPKCQPPPPPPPPPSSCQPTRLQRAGKALLKFTRSVDDPNGYTSNWKGADTCKFKGVRCAAYPNSNEQAVAGIDLNGAGLSGKKGTPLIFSGILDRIPELTFFHVNSNNFTGAVPTDITKYNYFYELDLSNNKAEGEFPKEVLESKQLVFLDLRFNRLSGSIPPQLFQLDLDVIFINNNQFSGNLPDNFGSTPARFLTFANNQLTGPIPSSIGQASKTLTEVLFLGNQFDGCLPYQIGYLKKATVFDVSKNCLTGPIPHSFACLESIQYLNLEHNQFYGEVPEMVCQLPGLCNKGNFSLSDNYFTQVGPACRDLIMKNVLDVSNNCILGLPNQRPHGQCSEFFSNVKPCPNPKYLHYVPCKGYYPHIHTAAVPAPPLTYNSLNPHRYSTSRPSRH 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3183 434 Gene3D Ribonuclease Inhibitor 234 395 IPR032675 -
Ssu2g3183 434 Pfam Leucine rich repeat N-terminal domain 64 98 IPR013210 -
Ssu2g3183 434 PANTHER BNAC05G26270D PROTEIN 41 412 - -
Ssu2g3183 434 SUPERFAMILY L domain-like 65 370 - -
Ssu2g3183 434 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 41 412 - -
Ssu2g3183 434 Pfam Leucine rich repeat 279 316 IPR001611 GO:0005515
Ssu2g3183 434 Gene3D Ribonuclease Inhibitor 62 233 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3183 Ssu-Chr2 94158809 94160113 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3183 60 383 Leucine-rich Repeat extension Gene Families AT4G13340 44.479 6.34e-80 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3183 - - gmx:100795489 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g3183 2 94158809 94160113 Ssu2g3183 2 94158809 94160113 ECH