Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3163 ATGGGGCACTCTAATGTGTGGAACTCTCATCCCAAGAACTATGGACCTGGTTCTCGCGCCTGCCGCGTGTGTGGGAACCCTCATGGATTGATCAGGAAGTACGGGCTTATGTGTTGCAGGCAGTGCTTCCGTAGCAATGCCAAGGAAATTGGCTTCATTAAGTACCGCTGA 171 0.5205 MGHSNVWNSHPKNYGPGSRACRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR 56
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3163 56 Gene3D 30s Ribosomal Protein S14; Chain N 1 56 IPR043140 -
Ssu2g3163 56 PANTHER 40S RIBOSOMAL PROTEIN S29 1 55 IPR039744 GO:0003735|GO:0008270
Ssu2g3163 56 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 13 49 - -
Ssu2g3163 56 Pfam Ribosomal protein S14p/S29e 7 56 IPR001209 GO:0003735|GO:0005840|GO:0006412
Ssu2g3163 56 PANTHER 40S RIBOSOMAL PROTEIN S29 1 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3163 Ssu-Chr2 93890555 93891887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3163 1 56 Cytoplasmic Ribosomal Protein Gene Family AT4G33865 92.857 1.55e-34 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3163 K02980 - pda:108511217 130.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g3163 2 93890555 93891887 Ssu7g0507 7 9411926 9413580 PCT