Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3162 ATGAGCTGCAACGGTTGCCGTGTCCTCCGTAAAGGTTGCAGCGAGGACTGCTTGCTGAGACATTGCCTAGAGTGGATAGAGAACCCAGAAGGGCAGGGTCACGCCACCCTATTCGTTGCCAGGTTCTTCGGCCGTGCCACCCTCATGTCTTTCCTTTCCTCCGTACCCGCTAACCAAAGATCCTGTATGTTTCGGTCACTTGTGTATGAAGCTGTAGGACGTACAGTAAATCCAGCTCACGGAGCAGTGGGGCTGCTATGGACTGGGAACTGGCACCTCTGCCAATTGGGGGTTCAGAAAGTTCTCGAAGGTGCTCCCTTGACTCCATTGCCCCCTCGCTTTCTACGTTCTACTCGCCCATCAAGGAAGGTTGCCGCTCATGTTAACGTGACTTCGCCCGAGACAGTTGCGGGAAGGTGTCAACAACCAGCACCGACACCGTCTGAGAAATCGGAGTTGTCAAGTATTTTAGGAGACTCTGCGTCTGGAACTAAGCTTCTCACACTATTCTTCTGA 516 0.531 MSCNGCRVLRKGCSEDCLLRHCLEWIENPEGQGHATLFVARFFGRATLMSFLSSVPANQRSCMFRSLVYEAVGRTVNPAHGAVGLLWTGNWHLCQLGVQKVLEGAPLTPLPPRFLRSTRPSRKVAAHVNVTSPETVAGRCQQPAPTPSEKSELSSILGDSASGTKLLTLFF 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3162 171 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Ssu2g3162 171 Pfam Lateral organ boundaries (LOB) domain 2 99 IPR004883 -
Ssu2g3162 171 PANTHER LOB DOMAIN PROTEIN 1 171 - -
Ssu2g3162 171 MobiDBLite consensus disorder prediction 134 155 - -
Ssu2g3162 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3162 Ssu-Chr2 93885640 93886523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3162 1 111 AS2 family AT3G49940 69.369 4.98e-56 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu2g3162 LOB 3.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3162 - - gmx:100816269 209.92