Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3161 ATGGTTGATCAGGGTAAGTTAGCAACAGAGCATGCCTCCAAAGAAAAAGGGTCAGAGAGCGCGACTCTGGTTCTCCGCAAATGTTACAAAGATCCCCACGCCGTTGGATTCTGCTCCACATATCTATCATACTGTCATATATCTGGAGCTGCATGGAGGGGCTACTCAAGTTTGAGCCGGAAGGATTCTACAGCTCTGAAGTTAAGTGGAAAATCAAGATCTAGTAGAGATCCTGCAGCTGATCCACAGAGCGCGTATGCAAGAagaagaagagaaagaataaatgaaagGTTGATAATCCTACAAAACCTTGTCCCCAATGGAACTAAGGTGGATATCAGCACAATGCTTGAGGAAGCAGTACAATATGTGAAGTTTTTACAGCTTCAAATTAAGCTTCTGAGCTCTGACGATCTGTGGATGTACACTCCATTGCTTACTATGGAATGA 450 0.42 MVDQGKLATEHASKEKGSESATLVLRKCYKDPHAVGFCSTYLSYCHISGAAWRGYSSLSRKDSTALKLSGKSRSSRDPAADPQSAYARRRRERINERLIILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYTPLLTME 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3161 149 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 79 141 IPR036638 GO:0046983
Ssu2g3161 149 MobiDBLite consensus disorder prediction 66 87 - -
Ssu2g3161 149 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 55 145 - -
Ssu2g3161 149 Pfam Helix-loop-helix DNA-binding domain 88 128 IPR011598 GO:0046983
Ssu2g3161 149 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 78 127 IPR011598 GO:0046983
Ssu2g3161 149 Gene3D - 80 141 IPR036638 GO:0046983
Ssu2g3161 149 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 55 145 - -
Ssu2g3161 149 SMART finulus 84 133 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3161 Ssu-Chr2 93881449 93885407 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3161 37 145 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 68.807 3.67e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu2g3161 HLH 3.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3161 - - var:108319891 147.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g3161 2 93881449 93885407 Ssu2g3161 2 93881449 93885407 ECH
Ssu2g3161 2 93881449 93885407 Ssu7g0517 7 9535840 9537785 PCT