LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu2g3152	atgAGAGGCGGAGAGGAGCGATCGACAGGGACAGGGATTCGGAAGAAGGGAACGGGAGTGAGAGCATGGCTGGTTCTGGACGGGAGAGGGGAGACGGAGGTGATGGAGGCCGGGAAGCACGCCATCATGAGGCGCACGGGCCTCCCCGCGCGTGACCTCCGCATATTGGACCCTCTCTTGTCCTACCCTTCAACCCTTTTGGGCCGTGAGAGGGCCATCGTGATCAACTTGGAGCACATCAAGGCCATCATCACGGCCCACGAGGTCCTCCTCCTCAACTCTCGTGACCCCTCCGTCACCCCCTTTGTCCACGAGCTCCAGCAGAGGATCTTCCGCCACCACTCTTCCAAACTCCAAGACCCTGACCCTGACCCTGACTCCGACGCCATCAAGATTCTCCCTTTCGAGTTCGTTGCCCTGGAGGCCTGCCTTGAGGCCGCCTGCAGCGTCTTGGAAAACGAGGCAAAGACGTTAGAGCAGGAGGCTCATCCCGCCTTGGACAAGCTCACCTCCAAGATTAGTACTCTAAATTTGGAACGCGTTCGTCAAATTAAGAGCCGCTTAGTCGCCATCACTGGTCGTGTTCAGAagGTGAGGGATGAATTGGAGCACTTGCTGGATGACGATGAAGATATGGCCGAGATGTATCTCACCGACAAGTTAGCTGAACAGCACTTGGAAACCTCTTCTGCCTCCTCCATAAATGAGGACGATGATGAGCAAAATCTTCTTCAACCTGACAGgaCCGCCCCTGAAATATCATTCGAAACTGGTCGAGGTTACGAGGATCATCACAATGCTGACAACTCCGCAGACCAAATGTTTGGTGCCTCCAATGTTCTTGGTAGGGACAGCCATGGAACCCGCGATAGCACTACCTTCAGTGCCGTCACCAAGCAACTTGATGTTGAGGAGCTTGAGATGCTCTTGGAGGCATACTTTGTGCAGATTGATGGCACGTTGAACAAGCTCTCTACGCTGAGGGAGTACGTTGATGACACAGAGGATTACATCAACATCATGCTGGATGACAAACAGAACCATCTCCTCCAAATGGGAGTCATGTTGACCACAGCAACTCTGGTAGTGAGTGCCTTTGTTGTTGTGGCTGGTATTTTTGGTATGAATATTCATATTGAGCTATTTGATTCCGATAAAGCTGGGATGACACAATTCCTCTGGACTGTTGGTGGTAGCACTGCGGGGACCATATTCTTGTATGTGGTTGCCATTGCCTGGTGTAAGCACAAACGCTTGCTAGAGTAA	1266	0.5221	MRGGEERSTGTGIRKKGTGVRAWLVLDGRGETEVMEAGKHAIMRRTGLPARDLRILDPLLSYPSTLLGRERAIVINLEHIKAIITAHEVLLLNSRDPSVTPFVHELQQRIFRHHSSKLQDPDPDPDSDAIKILPFEFVALEACLEAACSVLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTDKLAEQHLETSSASSINEDDDEQNLLQPDRTAPEISFETGRGYEDHHNADNSADQMFGASNVLGRDSHGTRDSTTFSAVTKQLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNIHIELFDSDKAGMTQFLWTVGGSTAGTIFLYVVAIAWCKHKRLLE	421

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Ssu2g3152	421	PANTHER	RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL	127	421	IPR039204	-
Ssu2g3152	421	CDD	Mrs2_Mfm1p-like	23	419	IPR039204	-
Ssu2g3152	421	PANTHER	MAGNESIUM TRANSPORTER MRS2-D-RELATED	8	117	-	-
Ssu2g3152	421	PANTHER	MAGNESIUM TRANSPORTER MRS2-D-RELATED	127	421	-	-
Ssu2g3152	421	MobiDBLite	consensus disorder prediction	227	249	-	-
Ssu2g3152	421	PANTHER	RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL	8	117	IPR039204	-
Ssu2g3152	421	Gene3D	-	11	94	-	-
Ssu2g3152	421	Coils	Coil	141	161	-	-
Ssu2g3152	421	Gene3D	Magnesium transport protein CorA, transmembrane region	96	349	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu2g3152	Ssu-Chr2	93777821	93781260	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu2g3152	23	421	MRS2 Gene Family	AT3G19640	66.364	0.0	540

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu2g3152	-		-	gmx:100819578	649.818

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu2g3152	2	93777821	93781260	Ssu2g3152	2	93777821	93781260	ECH

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