Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3152 atgAGAGGCGGAGAGGAGCGATCGACAGGGACAGGGATTCGGAAGAAGGGAACGGGAGTGAGAGCATGGCTGGTTCTGGACGGGAGAGGGGAGACGGAGGTGATGGAGGCCGGGAAGCACGCCATCATGAGGCGCACGGGCCTCCCCGCGCGTGACCTCCGCATATTGGACCCTCTCTTGTCCTACCCTTCAACCCTTTTGGGCCGTGAGAGGGCCATCGTGATCAACTTGGAGCACATCAAGGCCATCATCACGGCCCACGAGGTCCTCCTCCTCAACTCTCGTGACCCCTCCGTCACCCCCTTTGTCCACGAGCTCCAGCAGAGGATCTTCCGCCACCACTCTTCCAAACTCCAAGACCCTGACCCTGACCCTGACTCCGACGCCATCAAGATTCTCCCTTTCGAGTTCGTTGCCCTGGAGGCCTGCCTTGAGGCCGCCTGCAGCGTCTTGGAAAACGAGGCAAAGACGTTAGAGCAGGAGGCTCATCCCGCCTTGGACAAGCTCACCTCCAAGATTAGTACTCTAAATTTGGAACGCGTTCGTCAAATTAAGAGCCGCTTAGTCGCCATCACTGGTCGTGTTCAGAagGTGAGGGATGAATTGGAGCACTTGCTGGATGACGATGAAGATATGGCCGAGATGTATCTCACCGACAAGTTAGCTGAACAGCACTTGGAAACCTCTTCTGCCTCCTCCATAAATGAGGACGATGATGAGCAAAATCTTCTTCAACCTGACAGgaCCGCCCCTGAAATATCATTCGAAACTGGTCGAGGTTACGAGGATCATCACAATGCTGACAACTCCGCAGACCAAATGTTTGGTGCCTCCAATGTTCTTGGTAGGGACAGCCATGGAACCCGCGATAGCACTACCTTCAGTGCCGTCACCAAGCAACTTGATGTTGAGGAGCTTGAGATGCTCTTGGAGGCATACTTTGTGCAGATTGATGGCACGTTGAACAAGCTCTCTACGCTGAGGGAGTACGTTGATGACACAGAGGATTACATCAACATCATGCTGGATGACAAACAGAACCATCTCCTCCAAATGGGAGTCATGTTGACCACAGCAACTCTGGTAGTGAGTGCCTTTGTTGTTGTGGCTGGTATTTTTGGTATGAATATTCATATTGAGCTATTTGATTCCGATAAAGCTGGGATGACACAATTCCTCTGGACTGTTGGTGGTAGCACTGCGGGGACCATATTCTTGTATGTGGTTGCCATTGCCTGGTGTAAGCACAAACGCTTGCTAGAGTAA 1266 0.5221 MRGGEERSTGTGIRKKGTGVRAWLVLDGRGETEVMEAGKHAIMRRTGLPARDLRILDPLLSYPSTLLGRERAIVINLEHIKAIITAHEVLLLNSRDPSVTPFVHELQQRIFRHHSSKLQDPDPDPDSDAIKILPFEFVALEACLEAACSVLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTDKLAEQHLETSSASSINEDDDEQNLLQPDRTAPEISFETGRGYEDHHNADNSADQMFGASNVLGRDSHGTRDSTTFSAVTKQLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNIHIELFDSDKAGMTQFLWTVGGSTAGTIFLYVVAIAWCKHKRLLE 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3152 421 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 127 421 IPR039204 -
Ssu2g3152 421 CDD Mrs2_Mfm1p-like 23 419 IPR039204 -
Ssu2g3152 421 PANTHER MAGNESIUM TRANSPORTER MRS2-D-RELATED 8 117 - -
Ssu2g3152 421 PANTHER MAGNESIUM TRANSPORTER MRS2-D-RELATED 127 421 - -
Ssu2g3152 421 MobiDBLite consensus disorder prediction 227 249 - -
Ssu2g3152 421 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 8 117 IPR039204 -
Ssu2g3152 421 Gene3D - 11 94 - -
Ssu2g3152 421 Coils Coil 141 161 - -
Ssu2g3152 421 Gene3D Magnesium transport protein CorA, transmembrane region 96 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3152 Ssu-Chr2 93777821 93781260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3152 23 421 MRS2 Gene Family AT3G19640 66.364 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3152 - - gmx:100819578 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g3152 2 93777821 93781260 Ssu2g3152 2 93777821 93781260 ECH