Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3150 ATGGCAGCGGCAACGCAGAGTGCTTTTCAGTGCCACTACCTGGCTAGTCACAGCAAGCGCATCAAAATCTTGTGGGGCTTAATTCTCTTATTAGTTCTATTTGTATCCAACTCAGTTGCATCAAAAGCCATTGTCAAGACCTTACCAGGCTTCACTGGGGAGCTACCATTCGTACTCGAAACAGGTTCTTTCTCTGGATTTGCTTATGAAACAGGTCCTTTagaatttgatattaattcCTTCAAAGGGGGATTTCCAAAATTGGTATATTACCCAAGTGCATGGACGAAGGtaAATGCTAGCATCATATTCCTTGATTCGCCCGTTGGTACCGGCTTCTCCTATTCGAAAACTGTTCAAGGTTGGCCTTCTTCGGACACAGCATCATCTGAGCAAGCCTATCAGTTTCTCCGGAAGTGGCTAGAAGAAAACCCACAGTATCTCTTTAACCCACTGTTTATTGCGGGTGATTCTTATTCAGGCATAATTGTTCCTCTGATTACAAAGTTGATTGTAGAAGATAACGAAGCTGGATTACAGCCTCTGTTGAATCTAAAAGGTTATTTGATAGGGAGTCCTACGACAGATGAGTTTATCAACAGTAATTCAAAAATACCCTTTGCTCACCGCCTGGCACTAATATCAAACGATCTCTATGAGAAACTCAAATCAAGCTGCAACGGGAACTATGTCTCCGTGGATCCATCTAATGGAGGATGTGTCACTGCTCTTGCTGAGTACGATGAGtGCATCAAAGATATATGGACCAATCACATTCTGGAACCGAACTGTGAATTTGCTTCTCCCCAGCATGATGTGCAAGCACGTGAAAGATCACTCGAAGAAAATCGCCGAGATTTTGTGCTTTCCCCACCAAGAATTCCAGAATTATGGTGTCGGGCTTTTAACTATGTACTATCTTACACTTGGGCAAATGATCCCGGCGTTCAAGAAGCCTTGCATGTTCGAGAGgGGCTGTTCTTGAAATTAACTTACTTTGATGTCTCTTTGCACAGTGGTGACCACGACATGGTTGTTCCCTTTGTGGCTACTGACACATGGATAAGGGCTCTAAACTTACCTGTTGTCGAGAAATGGCGACCATGGTTTGTTGATGACCAAGTTGTAGGGTACACAAGAAAGTATTCAGAAAATGGATTTTGTTTAACTTACGTGACTGTGAAAGGTGCGGGTCACACAGCTCCGGAGTATTACCGCAGAGAATGTTATGAAATGTTTCAAAGGTATCAAAGCTGGAAATTTACCGCCAATCAATCTCAGAGAAACCCGTTAACCGATGAGAAATATGATTTTAACTCGAGAATTAAGTTTGCTCATAGAGTTGCACTTTTACCTGATGAACTTTACGAGGAAACTAAATTGGATTGTCAAGGAGAGTATGCTTATCCAAATAGAAACGATGCTCGTTGTATTGAGGACCTGGAGATAGTCAATCTGTGCTTAAAAGACATTAACAAGCCCATGGTGTTGGAACCAAAGTGCTCTTTCTCTGCGAAGCTGAACAAAGTTAACCGGGGACCAAGCCATCGCGATGTCTCAGATGCTCTCCTTTTAGACGTTAATCCTCCTAGGCGATGGTGCAGGGTTGATAACTATTTGTTCATATACATTTGGGCTAATGACAAGGAAGTACAAGAAGCTCTACACGTTAGAAATGGAACTATACAAGAGTGGGACGCATGCAACAAAAGCTTATCTTATGTTGGAgatcatgatttgatttttcCATACGTGGGCACCGAAGAATGGATACAATCTCTGAATTTGACTGTTTCTTCCGATGAAGAGTGGAGGCCATGGTTTGTCGATGGGCAAATTGCAGGGGACACAGCTCCAGAGTACAAGCCCAAGAAATGCTTTAACATGATTAGGAGGTGGTTTGCTACTTACTTTCTTTAG 1920 0.4203 MAAATQSAFQCHYLASHSKRIKILWGLILLLVLFVSNSVASKAIVKTLPGFTGELPFVLETGSFSGFAYETGPLEFDINSFKGGFPKLVYYPSAWTKVNASIIFLDSPVGTGFSYSKTVQGWPSSDTASSEQAYQFLRKWLEENPQYLFNPLFIAGDSYSGIIVPLITKLIVEDNEAGLQPLLNLKGYLIGSPTTDEFINSNSKIPFAHRLALISNDLYEKLKSSCNGNYVSVDPSNGGCVTALAEYDECIKDIWTNHILEPNCEFASPQHDVQARERSLEENRRDFVLSPPRIPELWCRAFNYVLSYTWANDPGVQEALHVREGLFLKLTYFDVSLHSGDHDMVVPFVATDTWIRALNLPVVEKWRPWFVDDQVVGYTRKYSENGFCLTYVTVKGAGHTAPEYYRRECYEMFQRYQSWKFTANQSQRNPLTDEKYDFNSRIKFAHRVALLPDELYEETKLDCQGEYAYPNRNDARCIEDLEIVNLCLKDINKPMVLEPKCSFSAKLNKVNRGPSHRDVSDALLLDVNPPRRWCRVDNYLFIYIWANDKEVQEALHVRNGTIQEWDACNKSLSYVGDHDLIFPYVGTEEWIQSLNLTVSSDEEWRPWFVDGQIAGDTAPEYKPKKCFNMIRRWFATYFL 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3150 639 Gene3D alpha/beta hydrolase 59 427 IPR029058 -
Ssu2g3150 639 Gene3D alpha/beta hydrolase 428 637 IPR029058 -
Ssu2g3150 639 Pfam Serine carboxypeptidase 63 323 IPR001563 GO:0004185|GO:0006508
Ssu2g3150 639 Pfam Serine carboxypeptidase 333 416 IPR001563 GO:0004185|GO:0006508
Ssu2g3150 639 Pfam Serine carboxypeptidase 429 572 IPR001563 GO:0004185|GO:0006508
Ssu2g3150 639 PRINTS Carboxypeptidase C serine protease (S10) family signature 389 402 IPR001563 GO:0004185|GO:0006508
Ssu2g3150 639 PRINTS Carboxypeptidase C serine protease (S10) family signature 140 165 IPR001563 GO:0004185|GO:0006508
Ssu2g3150 639 PRINTS Carboxypeptidase C serine protease (S10) family signature 105 115 IPR001563 GO:0004185|GO:0006508
Ssu2g3150 639 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 17 63 326 - -
Ssu2g3150 639 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 17 429 572 - -
Ssu2g3150 639 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 334 417 IPR001563 GO:0004185|GO:0006508
Ssu2g3150 639 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 572 618 IPR001563 GO:0004185|GO:0006508
Ssu2g3150 639 SUPERFAMILY alpha/beta-Hydrolases 63 418 IPR029058 -
Ssu2g3150 639 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 17 334 417 - -
Ssu2g3150 639 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 17 572 618 - -
Ssu2g3150 639 SUPERFAMILY alpha/beta-Hydrolases 429 637 IPR029058 -
Ssu2g3150 639 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 63 326 IPR001563 GO:0004185|GO:0006508
Ssu2g3150 639 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 429 572 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3150 Ssu-Chr2 93699324 93712135 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3150 545 635 Calmodulin-binding Proteins AT2G22960 35.606 8.39e-20 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3150 K16296 - qsu:112010401 504.982