Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3148 ATGGTTCATATGGAAGCAGCAACAGCAACACTGACAGGTTATCGGCTCCAACACTACCTGGCTACTCAGAGCAAGTGCATCAAAATCTTTACGGGCTTGATTCTCCTGTTGACTCTATCTAACTCAGTTGCATCAAGTACCATTGTCAAGACCTTACCGGGCTTCCTTGGTGAGCTACCATTCCGGCTTGAAACTGGGTACATTGGCGTAGGAGAAAAAGATGAGGTTCAGCTTTTCTATTACTTCATTCAATCCGAGGAGCAGCCAGCAACTGATCCATTGGTGCTTTGGCTCACTGGAGGACCTGGTTGCTCAGGTCTATTTGCTCTCATGTATGAAATGGGTATCAAAGCTGGAAATTTACCGCCAATCAATCTCAGAGGTTATGTTCTAGGAAACCCGTTAACCGATGAGAAATATGATTTTAACTCGAGAATTAAGTTTGCTCATAGAATTGCACTTTTACCTGATGAACTTTACGAGGAAACTAAATTGGATTGTCAAGGAGAGTATGTTTATCCAAATAGAAATGATACTCGTTGTATTGAGGATCTCGAGATAGTCAATCTGTGCTTAGAAGACATTAACAAGCCCATGGTGTTGGAACCAAAGTGCTCTTTCTCTGCGAAGCTGAACAAAGTTAACTGGGGACCAAGCCATCGCGATGTCTCAGATGCTCTCCTTTTAGACGTTAATCCTACTAGGCGATGGTGCAGGGTTGATAACTATTTGTTCATATACGTTTGGGCTAATGACAAAGAAGTACAAGAAGCTCTACACGTTAGAAATGGAACTATACAAGAGTGGGACACATGCAACAAAAGCTTATCTTATGTGTATGACATAATAAGTAGCCTAGATTATCACCGAAACTTCACCAGCGAAGATCTTACAGCAATCATTTACAGTGGAgatcatgatttgatttttcCGTACGTGGGCACCGAAGAATGGATACAATCTCTGAATTTGACTGTTTCGTCCGATGAAGAGTGGAGGCCATGGTTTGTCGATGGGCAAGTTGCAGGTTATACAGGGATATACCGAATGAAAAAGTACAGTATAACATTTGCGACTGTAAAGGGAGCAGGCCACACAGCTCCAGAGTACAAGCCCAAGCCATGCTTTAACATGATTAGGAGGTGGTTTGCTACTTACTTTCTTTAG 1167 0.419 MVHMEAATATLTGYRLQHYLATQSKCIKIFTGLILLLTLSNSVASSTIVKTLPGFLGELPFRLETGYIGVGEKDEVQLFYYFIQSEEQPATDPLVLWLTGGPGCSGLFALMYEMGIKAGNLPPINLRGYVLGNPLTDEKYDFNSRIKFAHRIALLPDELYEETKLDCQGEYVYPNRNDTRCIEDLEIVNLCLEDINKPMVLEPKCSFSAKLNKVNWGPSHRDVSDALLLDVNPTRRWCRVDNYLFIYVWANDKEVQEALHVRNGTIQEWDTCNKSLSYVYDIISSLDYHRNFTSEDLTAIIYSGDHDLIFPYVGTEEWIQSLNLTVSSDEEWRPWFVDGQVAGYTGIYRMKKYSITFATVKGAGHTAPEYKPKPCFNMIRRWFATYFL 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3148 388 Gene3D alpha/beta hydrolase 42 117 IPR029058 -
Ssu2g3148 388 Pfam Serine carboxypeptidase 118 384 IPR001563 GO:0004185|GO:0006508
Ssu2g3148 388 Pfam Serine carboxypeptidase 53 115 IPR001563 GO:0004185|GO:0006508
Ssu2g3148 388 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 18 23 115 - -
Ssu2g3148 388 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 120 387 IPR001563 GO:0004185|GO:0006508
Ssu2g3148 388 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 23 115 IPR001563 GO:0004185|GO:0006508
Ssu2g3148 388 ProSitePatterns Serine carboxypeptidases, histidine active site. 355 372 IPR033124 GO:0004185
Ssu2g3148 388 Gene3D alpha/beta hydrolase 118 386 IPR029058 -
Ssu2g3148 388 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 18 120 387 - -
Ssu2g3148 388 SUPERFAMILY alpha/beta-Hydrolases 49 384 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3148 Ssu-Chr2 93652238 93658372 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3148 249 384 Calmodulin-binding Proteins AT2G22960 49.265 6.76e-40 138