Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3147 ATGGCAGCGGCGACGCAGAGTGCTTTTCAGTGCCACTACCTGGCTAGTCACAGCAAGCGCATCAAAATCTTGTGGGGCTTAATTCTCTTATTAGTTCTATTTGTATCCAACTCAGTTGCATCAAAAGCCATTGTCAAGACCTTACCAGGCTTCACTGGGGAGCTACCATTCGTACTCGAAACAGGATACATAAGCGTGAATGATTCTGAGCTATTCTACTATTTTATCGAGTCACAAGGAAATCCTCAAGAGGACCCTCTATTTCTTTGGTTAACGGGAGGCCCTGGTTGTAGTTCTTTCTCTGGAATTGTTTATGAAATAGGTATCATCATATTCCTTGATTCGCCCGTTGGTACCGGCTTCTCCTATTCGAAAACTGTTCAAGGTTGGCCTTCTTCGGACACAGCATCATCTGAGCAAGCCTATCAGTTTCTCCGGAAGTGGCTAGAAGAAAACCCACAGTATCTCTTTAACCCACTGTTTATTGCGGGTGATTCTTATTCAGGCATAATTGTTCCTCTGATTACAAAGTTGATTGTAGAAGTTAATGTTATTCGAAAATGTTTCCAGGGTTATTTGATAGGGAGCCCTACGACAGATGAGTTTATCAACAGTAATTCAAAAATACCCTTTGCTCACCGCCTGGCACTAATATCAGACGATCTCTATGAGGCTTTTAACTATGTACTATCTTACACTTGGGCAAATGATCCCGGCGTTCAAGAAGCCTTGCATGTTCGAGAGgGGCTGTTCTTGAAATTAACTTACTTTGATGTCTCTTTGCACAGTGGTGACCACGACATGGTTGTTCCCTTTGTGGCTACTGACACATGGATAAGGGCTCTAAACTTACCTGTTGTCGAGAAATGGCGACCATGGTTTGTTGATGACCAAGTTGTAGGGTATGTGGATGTGGGTGGTGACCCCATTTGGCATTTTATTTCGACGATTATATTTCAACTTGAAAATGACTTCGAAGCAGTTAATCGATTTCTTATTTGTTCATTTCCCCTTTTCTTGATTGGTAATGATAGGTACACAAGAAAGTATTCAGAAAATGGATTTTGTTTAACTTACGTAACTGTGAAAGGTGCGGGTCACACAGCTCCGGAGTATTACCGCAGACAATGTTATGAAATGTTTCAAAGGTGGCTCCATGCCGAACCTTTATAA 1173 0.4194 MAAATQSAFQCHYLASHSKRIKILWGLILLLVLFVSNSVASKAIVKTLPGFTGELPFVLETGYISVNDSELFYYFIESQGNPQEDPLFLWLTGGPGCSSFSGIVYEIGIIIFLDSPVGTGFSYSKTVQGWPSSDTASSEQAYQFLRKWLEENPQYLFNPLFIAGDSYSGIIVPLITKLIVEVNVIRKCFQGYLIGSPTTDEFINSNSKIPFAHRLALISDDLYEAFNYVLSYTWANDPGVQEALHVREGLFLKLTYFDVSLHSGDHDMVVPFVATDTWIRALNLPVVEKWRPWFVDDQVVGYVDVGGDPIWHFISTIIFQLENDFEAVNRFLICSFPLFLIGNDRYTRKYSENGFCLTYVTVKGAGHTAPEYYRRQCYEMFQRWLHAEPL 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3147 390 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 17 110 225 - -
Ssu2g3147 390 Pfam Serine carboxypeptidase 257 304 IPR001563 GO:0004185|GO:0006508
Ssu2g3147 390 Pfam Serine carboxypeptidase 346 386 IPR001563 GO:0004185|GO:0006508
Ssu2g3147 390 Pfam Serine carboxypeptidase 110 227 IPR001563 GO:0004185|GO:0006508
Ssu2g3147 390 Pfam Serine carboxypeptidase 49 108 IPR001563 GO:0004185|GO:0006508
Ssu2g3147 390 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 17 346 386 - -
Ssu2g3147 390 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 17 23 108 - -
Ssu2g3147 390 Gene3D alpha/beta hydrolase 38 109 IPR029058 -
Ssu2g3147 390 Gene3D alpha/beta hydrolase 110 245 IPR029058 -
Ssu2g3147 390 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 17 258 304 - -
Ssu2g3147 390 Gene3D - 252 316 - -
Ssu2g3147 390 Gene3D - 341 386 - -
Ssu2g3147 390 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 258 304 IPR001563 GO:0004185|GO:0006508
Ssu2g3147 390 SUPERFAMILY alpha/beta-Hydrolases 45 307 IPR029058 -
Ssu2g3147 390 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 346 386 IPR001563 GO:0004185|GO:0006508
Ssu2g3147 390 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 110 225 IPR001563 GO:0004185|GO:0006508
Ssu2g3147 390 PRINTS Carboxypeptidase C serine protease (S10) family signature 357 370 IPR001563 GO:0004185|GO:0006508
Ssu2g3147 390 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 123 IPR001563 GO:0004185|GO:0006508
Ssu2g3147 390 PRINTS Carboxypeptidase C serine protease (S10) family signature 148 173 IPR001563 GO:0004185|GO:0006508
Ssu2g3147 390 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 23 108 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3147 Ssu-Chr2 93640322 93645075 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3147 234 390 Calmodulin-binding Proteins AT2G22960 30.769 6.95e-23 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3147 K16296 - pvy:116106602 306.99