LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu2g3135	ATGGTTGTTATGCAGGTATCCATGGCTGGGTTGAAGCTTGTGTTGCTGTTGACCTTCCTTAGCTTCCTCAACTTTGATACTTGTAAAGCACAGGAACAGGACTCGTCCCCCGTGTATCTGTACCAGAACTGTTCAGGCAGCAACACCACCGCCAACAGTGCCTACCAACTAAACGTGAGGAGCCTCCTCAATTCCTTATCTTCCAACACCACCACCGAATTCTCCAACACCACCGTCGGAACATCCTCGTCCGACACGGTCCGCGGTCTGTTCATGTGCAGGGGCGACGTGCCCTCTTGTGGACAGTGCGTGGTGAACGCAACGCGGCGTCTCCTGTCGCAGTGCTCTCTGTCGAAACAGGCGGTGATATGGTACGACGAGTGCATGGTTCGGTACTCCAACCGGTCGTTCTTCTCGACGGTGGACACTCGGCCACGTGTGGGGCTCTTGAACACCGCCAATATCTCCAACCAGGAATCCTTCATGCGCCTGCTCTTCCGAACAATAAACACAACCGCTGACGAGGCCGCCAATTTTTCCATCGGTGCGAAGAAATACGCGACGAGACAGGCCAACATTTCTGCGTTTCAGACGCTGTATTGTTTGGCTCAGTGCACACCCGATCTGTCCCCGCAAGACTGCAGAAGGTGTCTGAGTGGCGTGATAGGAGACCTTCCTTGGTGCTGTCAGGGAAAGCAGGGAGGAAGGGTTCTCTATCCGAGCTGTAATGTCAGGTACGAGCTCTACCCTTTCTATCGCCCCACCGTTTCCCCACCTTCGCCTTCGCCTTCGCCTTCGCCGCCAACACTTGTTCCTCCTCCAACTTCCGGAGGAAGCAGTGGGATCTCAGCTGGGACGATTGTTGCGATTGTTGTTCCAATCACGGTCGCTGTGCTTATATTTATAGTGGGAATCTGTTTCTTGAGTAGAAGAGCTAGGAAGAAGCGGGATTCTGTAATAAAGGAAGGAAAAACTCCGTATGACGACATCACCACTCTGGAGTCCTTGCAATTCGATTTCGGCACAATCGAAGCGGCCACAAGCAAATTCTCTGCGGGTAATAAGTTGGGCGAAGGTGGATTTGGTGAGGTTTACAAGGGTATTCTTCCCACTGGACAACAAATAGCTGTCAAGAGACTCTCCAAAAGCTCTGGACAAGGTGAAGAAGAATTTAAGAATGAAGTGCTCGTGGTTGCCAAGCTTCAACACAGAAATTTAGTCAGGCTTCTTGGGTTTTGCTTGCAAGGGGAAGAGAAGATACTTGTTTATGAATATGTACCCAACAAAAGTCTCGACTATATTCTCTTTGATCCTGAAAAGCAAAGGGAGTTGGATTGGGCGAGACGTTACAAGATTATTGGAGGAATTGCTCGAGGCATTCAATATCTTCATGAAGATTCTAGGCTTAGAATTATACATCGTGATCTTAAAGCTAGCAACATATTGTTGGATGGAGATATGAATCCAAAAATCTCAGATTTTGGCATGGCAAGAATATTTGGAGTTGATCAAACTCAAGGAAACACCAGCAGAATTGTAGGGACCTATGGTTACATGGCTCCAGAGTATGCGATGCATGGAGAGTTCTCCGTTAAGTCTGACGTGTACAGTTTTGGAGTCCTCCTTATGGAGATTATAAGTGGCAAAAAGAATAGCTCTTTCTATCAAACGGACGGTGCTGAGGATCTATTGAGCTATGCTTGGCAACTTCGGAAGGATGGAACCCCTTTGGAACTGATGGACCCCATATTAAGAGAATCCTATTCTCAGAGTGAATTTATCAGAAGCATCCATATTGGTTTGCTCTGTGTCCAAGAAGATCCAGCTGACAGACCTACAATGGCAACAATAGTTCTGATGCTAGAAAGTAACACCGTTAGTCTACCAGATCCTAAGCGGCCTGCATTTTTCGTCCACAGTGGAACTGAAACAAACATGCCAAAGGAGCTGCAATTTGATCAATCTACAACAAAGTCAATACCAATGTCTGTCAATGAGATGTCGATTAGCGAAATGGATCCTCGATAA	2028	0.4763	MVVMQVSMAGLKLVLLLTFLSFLNFDTCKAQEQDSSPVYLYQNCSGSNTTANSAYQLNVRSLLNSLSSNTTTEFSNTTVGTSSSDTVRGLFMCRGDVPSCGQCVVNATRRLLSQCSLSKQAVIWYDECMVRYSNRSFFSTVDTRPRVGLLNTANISNQESFMRLLFRTINTTADEAANFSIGAKKYATRQANISAFQTLYCLAQCTPDLSPQDCRRCLSGVIGDLPWCCQGKQGGRVLYPSCNVRYELYPFYRPTVSPPSPSPSPSPPTLVPPPTSGGSSGISAGTIVAIVVPITVAVLIFIVGICFLSRRARKKRDSVIKEGKTPYDDITTLESLQFDFGTIEAATSKFSAGNKLGEGGFGEVYKGILPTGQQIAVKRLSKSSGQGEEEFKNEVLVVAKLQHRNLVRLLGFCLQGEEKILVYEYVPNKSLDYILFDPEKQRELDWARRYKIIGGIARGIQYLHEDSRLRIIHRDLKASNILLDGDMNPKISDFGMARIFGVDQTQGNTSRIVGTYGYMAPEYAMHGEFSVKSDVYSFGVLLMEIISGKKNSSFYQTDGAEDLLSYAWQLRKDGTPLELMDPILRESYSQSEFIRSIHIGLLCVQEDPADRPTMATIVLMLESNTVSLPDPKRPAFFVHSGTETNMPKELQFDQSTTKSIPMSVNEMSISEMDPR	675

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu2g3135	675	SMART	serkin_6	350	621	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu2g3135	675	CDD	STKc_IRAK	356	622	-	-
	Ssu2g3135	675	Pfam	Salt stress response/antifungal	44	134	IPR002902	-
	Ssu2g3135	675	Pfam	Salt stress response/antifungal	156	249	IPR002902	-
	Ssu2g3135	675	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	14	673	-	-
	Ssu2g3135	675	ProSiteProfiles	Gnk2-homologous domain profile.	143	251	IPR002902	-
	Ssu2g3135	675	MobiDBLite	consensus disorder prediction	257	277	-	-
	Ssu2g3135	675	SUPERFAMILY	Protein kinase-like (PK-like)	336	644	IPR011009	-
	Ssu2g3135	675	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	14	673	-	-
	Ssu2g3135	675	MobiDBLite	consensus disorder prediction	257	274	-	-
	Ssu2g3135	675	Gene3D	Transferase(Phosphotransferase) domain 1	426	630	-	-
	Ssu2g3135	675	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	471	483	IPR008271	GO:0004672\|GO:0006468
	Ssu2g3135	675	ProSiteProfiles	Gnk2-homologous domain profile.	37	137	IPR002902	-
	Ssu2g3135	675	Gene3D	Phosphorylase Kinase; domain 1	311	425	-	-
	Ssu2g3135	675	Gene3D	-	36	137	IPR038408	-
	Ssu2g3135	675	Gene3D	-	146	251	IPR038408	-
	Ssu2g3135	675	Pfam	Protein tyrosine and serine/threonine kinase	352	619	IPR001245	GO:0004672\|GO:0006468
	Ssu2g3135	675	ProSiteProfiles	Protein kinase domain profile.	350	636	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu2g3135	675	ProSitePatterns	Protein kinases ATP-binding region signature.	356	378	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu2g3135	Ssu-Chr2	93431849	93434770	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu2g3135	35	675	Receptor kinase-like Gene Family	AT4G05200	54.545	0.0	686

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Ssu2g3135		PK_Tyr_Ser-Thr	3.1e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu2g3135	-		-	vun:114173511	1052.35