Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3133 ATGATTCATTCTCTAATGGTTTCCAAATCCCTTCAATTCTTCCTTCTTTGCACTCTTGCTTTAGTTTCAGACGTTGCAGTTGCCGATCCTCCGTATCCAAATTGTTCCACAAGCAGCAGTTATGCAGAAGGCAGTTTCTTCCGAAACAATCTAATCAACCTCCTTTCCTCTCTATCCTTGAATGCTTCAATCTCCAAATTCTATAAAACTTCTTATGGGATTGCCCCAAATAGAGTTTATGGCCTCTACATGTGCCTTGACTATATTACAAATGAATCGTGCCAGAAATGCATCACGACAGCAGCACAGGACGTTGTCAAACTCTGCCCTCGTGCTAAAGAAGCAGATTTATGGGAGGAGTTCTGTCAATTACGTTATTCCAACAAAAATTTCATGGGTAGGTTTGATGTCACAGGGAACATTGGCTTAGATAATATACAGAATATTTCAGAGCCAGAGAAATTTGAGGCTGCTGTGGATGAGACATTAAGTAATCTTACTAAGGTAGCATCTTTTGATGTTTCGGCAAACATGTCTGCTACGGGAGCAGTCCCCTTTaaagataaaacaatatttgCCTTAGTACAGTGCTCCAGAGACTTAACTGCCAATGATTGCAGTAGGTGCCTGCAAAGTGCCATAGGATACATACCAGGTTGCTGCTATTCCTCCATCGGGGCAAGAGTTCTGAGCCATAGCTGTTATTTGAGGTATGAATTTTATCCCTTTTATCTTGGTGCAACAGGACCCACGAATTCATCAACTGGCAAAAATGAAGGCACAAataattcaagaaaaatattgatgatTACAAGCATTATGGTTGTGGTAGGCTTGGTGatagtatttttcattttcggCCTGTACCTCGTCAGGAATACAAGAAATGAGAGAAGTAAGACTGGAAGAGACAATCATCAGATCAGTCTTCAGCAGCAAGGAGAAGCAGCATTTCACCACCAGATATTTCGAGGAAGAAATGACAAAATATCTGAGGACTTCCCTTCCATTGATCTCAGATCTCTTCGTGTGGCtaccaataatttttctgatttgAATAAGCTTGGACAAGGTGGCTTTGGCCCTGTCTACAAGggGATACTTAGTGATGGCCAAGAAGTAGCAATCAAGAGGCTCTCAACTTGCTCTGAGCAGGGATCAGAGGAATTCATAAACGAGGTTCTTCTGATAATGAAACTACAGcacaaaaatcttgtaaagctTCTTGGATTTTGTGTAGATGGAGAAGAGAAGATTCTTGTATATGAATTTTTACCCAACGGTAGTCTTGATGTTGTACTCTTTGATCCAAAGCAACGTGCACGACTCGATTGGACCAAACGCCTGGATATCATAAATGGAATAGCAAGAGGGATACTTTATCTTCATGAAGATTCtcgattaaaaataattcatagaGACCTAAAAGCAAGTAATGTATTGTTGGACTATGACATGAATCCAAAGATCTCAGACTTTGGAATGGCAAGGATATTTGCAGGAAGTGAAGGCGAAGCTAACACAGTTACAATAGTTGGCACATACGGATATATGGCTCCAGAGTATGCAATGGAGGGACTATATTCCGTAAAATCTGATGTTTTCGGGTTTGGAATACTGTTGCTTGAGATCATTACAGGGAGACGTAACGCGGGTTTCAATCACTCTAAAGACACTTCTAGCCTTCTATCATATGCATGGCATCTATGGAATGAGGGAAAGGGGCTAGAATTAATTGATCCCTTGTTATCTATTTCATGCCCCGGTGATCAGTTTTTGAGATACATGCATATTGGACTGCTCTGTGTTCAAGAAGATGCATATGATAGGCCAACCATGTCTTCCGTTGTTTTGATGTTGAAGAACGAATCAGCAACGCTTGACCAACCAGAACGACCACCTTTCTCTGTTGGCAGATTCATTGCTAATGATCGTAATGAGCCAGATTGCGAAGCATGCTCAGTCAGTTTCGTAACAGTGTCAGATATATCGCCCCAGTGA 2001 0.3938 MIHSLMVSKSLQFFLLCTLALVSDVAVADPPYPNCSTSSSYAEGSFFRNNLINLLSSLSLNASISKFYKTSYGIAPNRVYGLYMCLDYITNESCQKCITTAAQDVVKLCPRAKEADLWEEFCQLRYSNKNFMGRFDVTGNIGLDNIQNISEPEKFEAAVDETLSNLTKVASFDVSANMSATGAVPFKDKTIFALVQCSRDLTANDCSRCLQSAIGYIPGCCYSSIGARVLSHSCYLRYEFYPFYLGATGPTNSSTGKNEGTNNSRKILMITSIMVVVGLVIVFFIFGLYLVRNTRNERSKTGRDNHQISLQQQGEAAFHHQIFRGRNDKISEDFPSIDLRSLRVATNNFSDLNKLGQGGFGPVYKGILSDGQEVAIKRLSTCSEQGSEEFINEVLLIMKLQHKNLVKLLGFCVDGEEKILVYEFLPNGSLDVVLFDPKQRARLDWTKRLDIINGIARGILYLHEDSRLKIIHRDLKASNVLLDYDMNPKISDFGMARIFAGSEGEANTVTIVGTYGYMAPEYAMEGLYSVKSDVFGFGILLLEIITGRRNAGFNHSKDTSSLLSYAWHLWNEGKGLELIDPLLSISCPGDQFLRYMHIGLLCVQEDAYDRPTMSSVVLMLKNESATLDQPERPPFSVGRFIANDRNEPDCEACSVSFVTVSDISPQ 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3133 666 ProSiteProfiles Gnk2-homologous domain profile. 29 131 IPR002902 -
Ssu2g3133 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Ssu2g3133 666 Pfam Protein tyrosine and serine/threonine kinase 353 618 IPR001245 GO:0004672|GO:0006468
Ssu2g3133 666 CDD STKc_IRAK 355 622 - -
Ssu2g3133 666 SMART serkin_6 349 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g3133 666 Pfam Salt stress response/antifungal 147 240 IPR002902 -
Ssu2g3133 666 Pfam Salt stress response/antifungal 35 128 IPR002902 -
Ssu2g3133 666 Gene3D Phosphorylase Kinase; domain 1 311 424 - -
Ssu2g3133 666 ProSiteProfiles Gnk2-homologous domain profile. 137 243 IPR002902 -
Ssu2g3133 666 SUPERFAMILY Protein kinase-like (PK-like) 333 643 IPR011009 -
Ssu2g3133 666 Gene3D Transferase(Phosphotransferase) domain 1 425 632 - -
Ssu2g3133 666 ProSiteProfiles Protein kinase domain profile. 349 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g3133 666 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 65 663 - -
Ssu2g3133 666 Gene3D - 31 131 IPR038408 -
Ssu2g3133 666 Gene3D - 141 243 IPR038408 -
Ssu2g3133 666 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 65 663 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3133 Ssu-Chr2 93383119 93385701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3133 19 635 Receptor kinase-like Gene Family AT4G05200 42.590 8.49e-172 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu2g3133 PK_Tyr_Ser-Thr 6.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3133 - - gmx:102669364 1026.93