Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3126 ATGGCTACCCAACAATCTCTTTTAGATAAGCCTAGAAAATCTCTATCCAAAATTTTCTGGTCAATCCTCTCTATAGCTGCTGTCATAAGCTTATCAGCCTTTATTGGTTCTTATCTCATCAAACCCACCTCCTTCTTCAACTACCACTCCCCTCACcatgtatgtgaccatgcactTGATACCACATCCTGCTTAGCACATGTCTCAGAAGTAACTCAGGGTCCCTTCTTGACCACTATAAAAGACCACAAATTCAATTTGCTCCAGTCCTTCCTAATGAAATACACTTCACACATTGAGAGAGCTATGAACACAGTCAATTCTATCAAATTCAGGATCAACAATCCAAGGGAGGAAGCAGCTTTGCGGGACTGTGTGGAGCTGATGGACTTGTCCATGGACAGAGTTTGGGACTCAATGGTGGCTCTAACAAAACAAACCATTGAGTCACAGCAAGATGCACACACATGGCTAAGCAGCGTGCTCACTAACCATGCAACTTGCTTGGATGGGTTAGAGGGGCCAGCTCGGGTCCTTATGGAAGCTGAACTTGAGAACCTGATATCCAGAGCAAGAACATCTCTGGCCATGCTTGTTGCTGTTTTGCCTCCAAAGGTTGAGCAAATCATTGATGATTCACTAAATGGGGACTTTCCCTCGTGGGTGACAAGCAAGGACCGGAGGCTGTTGAAGTCTACGGTTGGGGACATCAAGGCCAATGTTGTGGTAGCTAAGGATGGGAGTGGCAAATTTAAGACGGTGGCTGAAGCTGTGGCATCTGCACCTGACAACGGTAAGACAAGGTACGTTATTTACGTTAAAAAGGGCACATATAAAGAGAATGTTGAAATTGGTAAGAAGAAGACAAACGTGATGCTCGTGGGTGACGGTATGGGTGCAACTGTAATCACCGGCAGCTTGAATTTCGTCGACGGAACAAGCACCTTTAAGACTGCCACCGTTGCTGCTGTGGGCGATGGATTTATAGCCCAGGACATTTGGTTCCAAAACACAGCAGGCCCACAGAAACACCAAGCAGTGGCTCTTCGCGTAGGCGCTGACCAATCCGTCATAAATCGTTGTCGCATTGACGCCTTCCAAGACACTCTCTATGCCCACTCTAACAGGCAGTTCTACCGAGACTCTTTTATCACAGGCACTGTTGACTTCATATTTGGAAACGCAGCTGTTGTGTTCCAAAAGTGCACCCTAGAGGCCCAAAAGCCCATGAGTAACCAGAACAATATGGTCACGGCCCAAGGACGAGAAGATCCAAACCAAAACACAGGAACTTCAATTCAACAATGCAACCTAACACCAAGCTCGGATCTTAAGCCTGTTGTGGGTTCCATCAAAACTTTTCTTGGCCGTCCATGGAAGAAGTACTCCAGAACCGTTGTGATGCAGTCGTCACTGGACAGTCACATTGACCCAACAGGATGGGCAGAGTGGGATGCTCAGAGTAAGGACTTTTTGCAAACGTTGTACTATGGAGAATACATGAATAGCGGACCAGGTGCTGGTACCAGCAAGAGAGTGAATTGGCCTGGTTACCAAATCATTAAAACTGCAGCAGAGGCTAGCAAGTTCACAGTCACACAGCTCATCCAAGGTAATGTTTGGTTGAAGAACACCGGGGTCAACTTCATTGAAGGCCTCTAA 1662 0.4609 MATQQSLLDKPRKSLSKIFWSILSIAAVISLSAFIGSYLIKPTSFFNYHSPHHVCDHALDTTSCLAHVSEVTQGPFLTTIKDHKFNLLQSFLMKYTSHIERAMNTVNSIKFRINNPREEAALRDCVELMDLSMDRVWDSMVALTKQTIESQQDAHTWLSSVLTNHATCLDGLEGPARVLMEAELENLISRARTSLAMLVAVLPPKVEQIIDDSLNGDFPSWVTSKDRRLLKSTVGDIKANVVVAKDGSGKFKTVAEAVASAPDNGKTRYVIYVKKGTYKENVEIGKKKTNVMLVGDGMGATVITGSLNFVDGTSTFKTATVAAVGDGFIAQDIWFQNTAGPQKHQAVALRVGADQSVINRCRIDAFQDTLYAHSNRQFYRDSFITGTVDFIFGNAAVVFQKCTLEAQKPMSNQNNMVTAQGREDPNQNTGTSIQQCNLTPSSDLKPVVGSIKTFLGRPWKKYSRTVVMQSSLDSHIDPTGWAEWDAQSKDFLQTLYYGEYMNSGPGAGTSKRVNWPGYQIIKTAAEASKFTVTQLIQGNVWLKNTGVNFIEGL 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3126 553 CDD PMEI-like_4 57 201 - -
Ssu2g3126 553 Pfam Pectinesterase 240 539 IPR000070 GO:0030599|GO:0042545
Ssu2g3126 553 PANTHER PECTINESTERASE 29 551 - -
Ssu2g3126 553 Pfam Plant invertase/pectin methylesterase inhibitor 52 193 IPR006501 GO:0004857
Ssu2g3126 553 ProSitePatterns Pectinesterase signature 2. 384 393 IPR033131 -
Ssu2g3126 553 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 197 IPR035513 -
Ssu2g3126 553 PANTHER PECTINESTERASE 29 551 - -
Ssu2g3126 553 TIGRFAM PME_inhib: pectinesterase inhibitor domain 86 177 IPR006501 GO:0004857
Ssu2g3126 553 SUPERFAMILY Pectin lyase-like 238 552 IPR011050 -
Ssu2g3126 553 SMART PMEI_2 46 197 IPR006501 GO:0004857
Ssu2g3126 553 ProSitePatterns Pectinesterase signature 1. 265 284 IPR018040 -
Ssu2g3126 553 Gene3D - 234 553 IPR012334 -
Ssu2g3126 553 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 201 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3126 Ssu-Chr2 93275394 93277731 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3126 3 553 Carbohydrate Esterase AT1G11580 56.128 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3126 K01051 - gmx:100815836 978.778