Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3125 ATGACTACCCAAGAATCTCTGTTAGACAAGCCTAGAAAATCTGTTTCCAAAACTATTTGGTTCATTCTCTCTATAGCTGTTGTGCTATGTTCATCAGCCCTTATTGGTTCTTATCTCATCAAATCCCCTTCCTTCTTCCACCACTCCTTCTCTCACCATGTCTGTGATCATGCTCTTGATATTGCATCCTGTTTAGCACACGTCTCAGAAGTAGCTCAAGATTCGATCTTGACTACCACAAAAGACCACAAATTCAATTTGCTCCATTCCTTCCTAATGAAATCCACCTCACGCATTCAGAGTGTTATGAACACAGCCAATGCTATCAAACTCAGGATCAACAGTCCAAGGGACGATGCAGCTTTGCAGGACTGTGTGGAGATGATGGACTTGTCCATTGATAGGGTTTGGGACTCAATGGTAGCTCTAACAAAAGAAACCACTGATTCGCTGCAAGATGCACACACATGGCTAAGCAGCGTGCTCACTAATCATGCAACTTGCTTGGATGGATTGGAGGGGCCAGCTCGAGTCCTTATGGAGGCTATGCTTCAGGACTTGATATCCAGAGCAAGAACTTCTCTGGCCGTGCTTGTTAATGTTTTACCTCCGAAGGTTGAGCAAATCATTGATGAGACACTAAATGGAGACTTTCCCTCATGGGTGACAAGCAAAGATCGGAGGTTGTTGGAGTCTTCGGCTGGGGATGTCAAGGCCAATGTTGTGGTGGCTAAGGATGGGAGTGGCAACTTCAAGACTCTTGCTGAGGCTGTGGCATCCGCACCCGACAAAGCTGCGGTTGGGGACGGGTTTATAGCGCAGgatatttggtttcaaaacaCAGCAGGCCCACAGAAGCACCAGGCAGTGGCCCTCCGTGTTGGCGCCGACCAGTCCATCATAAACCGTTGTCGCATTGATGCCTTTCAAGACACTCTTTATGCCCACTCCAATAGGCAATTCTACCACGATTCCTTCATCACGGGCACCATTGACTTCATATTCGGAAATGCAGCTGTTGTGTTCCAGAAGTGCAAGCTAGTGGCCCGAAAGCCCATGAATAACCAAAACAACATGATCACAGCCCAAGGACGAGTAGATCCAAACCAAAACTCAGGAACTTCAATTCAACAATGTGACCTAACACCGAGTTCGGATCTTAAACCTGTTGTGGGCTCTTTCAAAACTTTTCTGGCCGTCCGTGGAAGAACTTCTCGAGAACCGTTGTGA 1230 0.465 MTTQESLLDKPRKSVSKTIWFILSIAVVLCSSALIGSYLIKSPSFFHHSFSHHVCDHALDIASCLAHVSEVAQDSILTTTKDHKFNLLHSFLMKSTSRIQSVMNTANAIKLRINSPRDDAALQDCVEMMDLSIDRVWDSMVALTKETTDSLQDAHTWLSSVLTNHATCLDGLEGPARVLMEAMLQDLISRARTSLAVLVNVLPPKVEQIIDETLNGDFPSWVTSKDRRLLESSAGDVKANVVVAKDGSGNFKTLAEAVASAPDKAAVGDGFIAQDIWFQNTAGPQKHQAVALRVGADQSIINRCRIDAFQDTLYAHSNRQFYHDSFITGTIDFIFGNAAVVFQKCKLVARKPMNNQNNMITAQGRVDPNQNSGTSIQQCDLTPSSDLKPVVGSFKTFLAVRGRTSREPL 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3125 409 SUPERFAMILY Pectin lyase-like 238 401 IPR011050 -
Ssu2g3125 409 CDD PMEI-like_4 57 199 - -
Ssu2g3125 409 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 196 IPR035513 -
Ssu2g3125 409 Gene3D - 264 407 IPR012334 -
Ssu2g3125 409 PANTHER PECTINESTERASE 25 264 - -
Ssu2g3125 409 PANTHER PECTINESTERASE 265 399 - -
Ssu2g3125 409 SMART PMEI_2 46 197 IPR006501 GO:0004857
Ssu2g3125 409 ProSitePatterns Pectinesterase signature 2. 327 336 IPR033131 -
Ssu2g3125 409 Gene3D Invertase/pectin methylesterase inhibitor family protein 50 202 IPR035513 -
Ssu2g3125 409 PANTHER PECTINESTERASE 265 399 - -
Ssu2g3125 409 TIGRFAM PME_inhib: pectinesterase inhibitor domain 51 176 IPR006501 GO:0004857
Ssu2g3125 409 Pfam Pectinesterase 265 398 IPR000070 GO:0030599|GO:0042545
Ssu2g3125 409 Pfam Plant invertase/pectin methylesterase inhibitor 51 186 IPR006501 GO:0004857
Ssu2g3125 409 PANTHER PECTINESTERASE 25 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3125 Ssu-Chr2 93265294 93267670 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3125 3 399 Carbohydrate Esterase AT1G11580 41.379 2.27e-109 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3125 K01051 - gmx:100815836 600.127