Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3124 ATGACAAGAGCATTGCTATATCTATCATTATCACTATCATTAGTGGTATTACTCTTGCTTTCATGTGGAATTCATGAGTGTGAAGGCCAAGATCTCGAGGCTCTCCCTCCAGCGGCAGAAAGTTGTAGTGGGGTTTTCATTTCCTATGACTTTCTCACTCGAAGGAAAGAATTCCCTCGCGTGAAGAATGCCACAGCACAGTCTTGGGCCTTCAATGCCACCGCAACAGTTCTCAACACAGGCAAAGATGTGGTTAAAGCGTGGAAGTTGTTCATAGGGTTTCAACATGATGAGATTCTAGTCTCTGCCAGTGGAGGTCATTTATTAGATGCAACTGACTTCCCTGCTTCGGTGACCATGGAGAATAATCACCTTTTGGGACGCCTGGATCATTGGAACTTGACATGGGAGTGGACAAGAGGggaatttatatataacatgaaaGGTGCTTTCACACGTGACATGGACTACTCAGGTTGCATCTATGGTGAAGCAGGACAGTATTACAAGGACATGGACTTCTCTAAAGTCATTAACTGTCAAAAGAATCCAGTAGTCAGTGACTTGCCTACAGAGAAATATAATGACACTGAAATTGGAAAGATACCTCACTGTTGCAAAAACGGAACTCTTTTACCTACCTTGATGGATCCAACCAAATCCAAGTCTGTTTTCCAAATGCAAGTGTTCAAAATTCCACCTGATTTAAACAAAACAGCAATTTACCCTCCAGAGAAATGGAAAATAATGGGCATTCTAAACCCGGATTACAAATGTGGGTCACCTATTAGAGTGGAACCTGCCCAATTTCCAGAACCTAGGGGACTTGAAGCATCGGTTATTGCCATTGCAAGTTGGCAAATAGTCTGCAATATCACTAAGTCAACCAAAAGGAGCACTCGCTGTTGTGTTTCTTTCTCTGCTTATTACAATGAGTCCATAATACCTTGCAACACATGTGCCTGTGGTTGTGATAACACAAAACACTGTAATCCTAATTCACCAGCATTGCTTCTCCCTCCAGAAGCTCTTCTTGTACCCTTTGAGAATAGGACACTGAAGACGGTTGCTTGGGCCAAACTAAAGCATTTTAATGTCCCAACAAAATTGCCATGTGCTGACAATTGTGGAGTTAGCATAAACTGGCATGTAGCTTCAGACTTCAAAGATGGGTGGAGTGCCAGAATCACTCTGTTCAATTGGCAGCCTAGGAGTTTTGAGAATTGGTTCACTGCACTGCAATTCAAGAAGGCTTCCCTTGGCTATGAAAAAGTCTATTCTTTTAATGGAACATTCCTTCCACGGCTCAACCATACTATTTTCTTGCAAGGATTACAAGGAGCAAACTTTTTGATAGGTGAAGACAATGCAACAAACCCGAAGGTGCCAGGAAAACAACAATCTGTTATTTCCTTTACTAAGAAACATACACCAGGCATCAAAATTTCAAAGGGAGATGGTTTCCCTTCAAGAGTCCTTTTTAATGGCGAAGAGTGTTCTATTCCTACCCGATTCCCTGTGGAAAGTGCAAACCAACGTAATGTAGATTTAGCACACGAACTATTATTAGTTTTAGTGTTAGCTTTTACGATGAGTCAAATACTATATTAA 1611 0.4115 MTRALLYLSLSLSLVVLLLLSCGIHECEGQDLEALPPAAESCSGVFISYDFLTRRKEFPRVKNATAQSWAFNATATVLNTGKDVVKAWKLFIGFQHDEILVSASGGHLLDATDFPASVTMENNHLLGRLDHWNLTWEWTRGEFIYNMKGAFTRDMDYSGCIYGEAGQYYKDMDFSKVINCQKNPVVSDLPTEKYNDTEIGKIPHCCKNGTLLPTLMDPTKSKSVFQMQVFKIPPDLNKTAIYPPEKWKIMGILNPDYKCGSPIRVEPAQFPEPRGLEASVIAIASWQIVCNITKSTKRSTRCCVSFSAYYNESIIPCNTCACGCDNTKHCNPNSPALLLPPEALLVPFENRTLKTVAWAKLKHFNVPTKLPCADNCGVSINWHVASDFKDGWSARITLFNWQPRSFENWFTALQFKKASLGYEKVYSFNGTFLPRLNHTIFLQGLQGANFLIGEDNATNPKVPGKQQSVISFTKKHTPGIKISKGDGFPSRVLFNGEECSIPTRFPVESANQRNVDLAHELLLVLVLAFTMSQILY 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3124 536 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Ssu2g3124 536 PANTHER COBRA-LIKE PROTEIN 7 116 533 - -
Ssu2g3124 536 PANTHER COBRA-LIKE PROTEIN 7 11 118 - -
Ssu2g3124 536 Pfam COBRA-like protein 116 293 IPR006918 GO:0010215|GO:0031225
Ssu2g3124 536 PANTHER COBRA-LIKE PROTEIN 7 11 118 - -
Ssu2g3124 536 PANTHER COBRA-LIKE PROTEIN 7 116 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3124 Ssu-Chr2 93230019 93236590 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3124 112 531 COBRA Gene Family AT3G20580 59.719 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3124 - - gmx:100799716 735.717