Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3123 ATGTTTCCCACTAACATGTTTGATTCTCACCCTCACATGCTTGATATGTCACCCCACAATACTACTTGCTCTGAGAGTGATTTGGGAAAGGCCAGAGATGATGAATACGAGATCAAATCTGGCACTGACACCATGGACGCTCCTTCCGGGGACGACCAAGATCCCAACCCACGACCCAAAAAGAAGGGTTACCACCGCCACACACAGCGCCAAATTGAAGAAATGGAAGCCTTCTTCAAGCAGTGTCCTCACCCAGATGACAAGCAAAGAAAAGTGCTGAGCCGTGAGCTGGGGTTAGAGCCGTTGCAAATCAAGTTTTGGTTCCAAAACAAGCGCACCCAGATAAAGACTCAACATGAACGACATGAGAATGCTATCTTGAAGGCCGAGAATGAAAAGCTTCGCGCTGAGAACAATAGGTACAAGGAGGCCCTAACCAATGCTACATGCCCCCACTGTGGAGGCCCAGCTGCTCTTGGCGAAATGTCCTTCGACGAGCAGCACTTGAGGATTGAGAATGCTCGGTTAAGAGAAGAGaTTGATAGGATTTCAGGAATTGCTTCGAAATATGTTGGAAAGCCCATGACTTCTTCGTACTCCAACCTTTCATCTCTCAACAACAACCACGTGCCTGTTGGTAACTATGGAGCACAGTCAGGCACGGTAGGAGAAATGTATGGCGGCGGTGACCTTTTTAGGTCACTCCCAGCTCCTGGTGATGCTGACAAACCCATGATTGTGGAGCTTGCCGTTGCAGCAATGGAGGAACTGACAAGACTAGCTCAGGCTGGAGAGCCTTTATGGGTCCCCAGCAACCACCATTCTGAGATTTTAAATGAAGATGAATACTTGAGGACTTTCCCTACTAGAGGTTTAGGTCCCAAACCCTTGAGCTTGAGATCTGAAGCTTCAAGGGAATCCGTGGTGGTCATCATGAATCACATCAACCTTATTGATATCCTTATGGATGTGAACCAATGGTCAACTATGTTTTGCGGTATTGTCTCAAGAGCATTGACCCTTGAAGTCCTTTCAACTGGAGTAGCAGGAAACTACAACGGAGCCTTGCAAGTGatgTCAGCTGAGTTCCAAGTCCCTTCACCACTTGTACCTACTCGTGAGAACTATTTCGTAAGGTACTGTAAGCAGCAACCGGATGGGATATGGGCGGTGGTCGATGTTTCCTTGGATAATCTGCGACCCAGTACAATCTCAAGAAGCCGAAGAAGGCCCTCTGGTTGTTTAATTCAAGAATTGCCAAATGGTTACTCCAAGGTTACATGGATTGAACATGTAGAAGTGGATGATAGAGCGGTGCATAGCATATATAGACCTCTAGTTAATTCCGGCCTCGCCTTTGGAGCTAAACGCTGGGTGGCTACATTAGATAGACAGTGCGAACGTCTTGCCAGTTCAAGGGCCAACAACATACCAGCAGGGGACCTCTGTGTGATAACCAGTAGTGAGGGAAGGAAAAGTATGCTGAAGCTGGCGGAGAGAATGGTAATTAGCTATTGTACTGGAGTCGGTGCTTCTAGTGCTCATGCTTGGACAACGCTATCCGCAACTGGATGTGATGATGTAAGGGTCATGACCAGAAAGAGCACCGACGACCCTGGCAGACCCCCCGGTATAGTGCTCAGTGCTGCCACTTCTTTCTGGCTTCCAGTTCCCCCAAAGATGCTTTTTGATTTCCTACGTGTTGAAAACTCAAGAAATGAGTGGGACATTCTCTCCAACGGGGGTCTAGTTCAAGAATTGGCACACATAGCAAATGGTCGTGATCCCGGCAACTGTGTCTCTTTACTTCGAGTCAATAGTGCAAATTCAAGCCAAAGTAATATGCTGATACTTCAAGAGAGTTGCATTGATTCTACTGGCTCATATGTAGTTTATGCTCCCGTGGATATTGTTGCTATGAATGTAGTCTTGAGTGGAGGGGATCCAGATTATGTTGCCCTGCTCCCATCAGGCTTTGCTATTCTTCCTGATGGACCTGGATTAAACGGGGGGCCCATACTTGATGTTGGATCTGGAGGTTCTCTACTGACAGTTGCATTTCAGATCCTAGTTGATTCAGCCCCAACAGCCAAGCTATCTCTGGGTTCGGTGGCCACTGTTAACAGTTTAATTAAGTGCACAGTTGAAAGGATCAAGGTTGCAGTCATGCGTGACAACACCTAA 2184 0.4725 MFPTNMFDSHPHMLDMSPHNTTCSESDLGKARDDEYEIKSGTDTMDAPSGDDQDPNPRPKKKGYHRHTQRQIEEMEAFFKQCPHPDDKQRKVLSRELGLEPLQIKFWFQNKRTQIKTQHERHENAILKAENEKLRAENNRYKEALTNATCPHCGGPAALGEMSFDEQHLRIENARLREEIDRISGIASKYVGKPMTSSYSNLSSLNNNHVPVGNYGAQSGTVGEMYGGGDLFRSLPAPGDADKPMIVELAVAAMEELTRLAQAGEPLWVPSNHHSEILNEDEYLRTFPTRGLGPKPLSLRSEASRESVVVIMNHINLIDILMDVNQWSTMFCGIVSRALTLEVLSTGVAGNYNGALQVMSAEFQVPSPLVPTRENYFVRYCKQQPDGIWAVVDVSLDNLRPSTISRSRRRPSGCLIQELPNGYSKVTWIEHVEVDDRAVHSIYRPLVNSGLAFGAKRWVATLDRQCERLASSRANNIPAGDLCVITSSEGRKSMLKLAERMVISYCTGVGASSAHAWTTLSATGCDDVRVMTRKSTDDPGRPPGIVLSAATSFWLPVPPKMLFDFLRVENSRNEWDILSNGGLVQELAHIANGRDPGNCVSLLRVNSANSSQSNMLILQESCIDSTGSYVVYAPVDIVAMNVVLSGGDPDYVALLPSGFAILPDGPGLNGGPILDVGSGGSLLTVAFQILVDSAPTAKLSLGSVATVNSLIKCTVERIKVAVMRDNT 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3123 727 MobiDBLite consensus disorder prediction 26 41 - -
Ssu2g3123 727 CDD START_ArGLABRA2_like 243 467 - -
Ssu2g3123 727 Gene3D - 307 471 IPR023393 -
Ssu2g3123 727 SMART START_1 248 468 IPR002913 GO:0008289
Ssu2g3123 727 SUPERFAMILY Homeodomain-like 46 118 IPR009057 -
Ssu2g3123 727 Gene3D - 48 134 - -
Ssu2g3123 727 ProSiteProfiles START domain profile. 239 471 IPR002913 GO:0008289
Ssu2g3123 727 CDD homeodomain 61 119 IPR001356 GO:0003677
Ssu2g3123 727 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 15 724 IPR042160 -
Ssu2g3123 727 Coils Coil 112 147 - -
Ssu2g3123 727 Pfam Homeodomain 61 116 IPR001356 GO:0003677
Ssu2g3123 727 MobiDBLite consensus disorder prediction 1 68 - -
Ssu2g3123 727 SUPERFAMILY Bet v1-like 489 718 - -
Ssu2g3123 727 SMART HOX_1 60 122 IPR001356 GO:0003677
Ssu2g3123 727 ProSitePatterns 'Homeobox' domain signature. 93 116 IPR017970 GO:0000981|GO:0006355
Ssu2g3123 727 ProSiteProfiles 'Homeobox' domain profile. 58 118 IPR001356 GO:0003677
Ssu2g3123 727 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 15 724 - -
Ssu2g3123 727 SUPERFAMILY Bet v1-like 240 470 - -
Ssu2g3123 727 Pfam START domain 249 468 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3123 Ssu-Chr2 93219847 93223171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3123 1 725 Homeobox Transcription Factor Family AT4G21750 75.393 0.0 1156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu2g3123 START 1.3e-55 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3123 K09338 - gmx:100815499 1358.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g3123 2 93219847 93223171 Ssu7g0596 7 12153807 12158860 PCT