Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3121 ATGGGTGCTGATGTTGATGCGACGCTGGGCTCATGTAGCCTATCTGAGCTCTGTTCTGATAACCATGACCCAGAGAAATCAGAGAATGAAAGAAAGGGTCCAAAAATTGGAGTGTTGTGCATGATGCTCGTGAATGAGATGATGTGTGTGTGCTTTTTGAGGATGAGGTACTGGATGCGTCACAACCTTCACATCCCATCCCCTCATCAATGGTGTTCCTCTTGCTCGGTGCAAGGGTGTTCGAAACTATGGGGGAGGTTCGCAACAGAGATCAAAGACCCATTGAAAAAAGCAAGGGAGTGGTTGGGAACCTTCGACTCCATCAAGGAAGCTGGTCGAGCCTATGGCGCTACCACTCGGGCTCTCCGAGGTCCTAAGGCTAAGACCATTTTCCCTCTCTCACCTTTTTATTACCAACACCCGACCACCGATCCTTTCTTCTACACGAGTTTCCACAACTACCGATCCGAAGACCCAAGGCCAAGATCCTCTTCCTCTATCATTGACAATGGTGAAAACATCGTCTCCTCGTCATTTCGACCTCCCTTGCCGTTCGATCTCAACGCATTGTTGTTTGATGATGTTGCCCCGGATGACGATCTTTTGCTACATCACGCTTTGTTGATCGtgcaatga 636 0.4827 MGADVDATLGSCSLSELCSDNHDPEKSENERKGPKIGVLCMMLVNEMMCVCFLRMRYWMRHNLHIPSPHQWCSSCSVQGCSKLWGRFATEIKDPLKKAREWLGTFDSIKEAGRAYGATTRALRGPKAKTIFPLSPFYYQHPTTDPFFYTSFHNYRSEDPRPRSSSSIIDNGENIVSSSFRPPLPFDLNALLFDDVAPDDDLLLHHALLIVQ 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3121 211 ProSiteProfiles AP2/ERF domain profile. 73 132 IPR001471 GO:0003700|GO:0006355
Ssu2g3121 211 SUPERFAMILY DNA-binding domain 84 133 IPR016177 GO:0003677
Ssu2g3121 211 Gene3D AP2/ERF domain 77 134 IPR036955 GO:0003700|GO:0006355
Ssu2g3121 211 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 83 144 - -
Ssu2g3121 211 SMART rav1_2 82 138 IPR001471 GO:0003700|GO:0006355
Ssu2g3121 211 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 7 83 144 - -
Ssu2g3121 211 CDD AP2 84 134 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3121 Ssu-Chr2 93171582 93175866 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3121 84 133 AP2-EREBP Transcription Factor Family AT1G50640 72.000 1.49e-18 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3121 K09286 - gmx:100803943 116.701