Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3120 ATGAGAAGCTGCGGGATAATTCTGGCTGCATTGTTGAGCACATCGGCCCTCTGTCTGGCCGTGCTTGTTGCTGTTTGGCCTCCAAAGGTTAAACAGAGCATTGATGGGTCACTAAATGGGGACTTCCCCCCATGGGTGACAAGCAAGGACAGAAGGTTCTTGGAGTCTACCGCTGGAGACATCAATGCCAATGTTGTGGTGGCTCAGGATGGGAGCGGCAACTTCACCACTGTGGTTCAGGCTGTGGCATCCGCACCCAACAACAGCAACACAAGGTTTATTATTTACGTGAAGATGGGAACGTACAAAGAAAATGTTCAGATCAATAGTGAGAAGACTAATGTGATGCTCCTGGGTGATGGCATGAACGCAACGATAATAACTGGCAGCTTGAATTTCGTGGACGGACAAGACATCTCAGTGAGCGCCACTGTTGGTGTGGATGGGAATGGGTTTATAGCCCAGGACCTTTGCTTCAAAAACACAGCAGGCCCACAGAAGGGGCAGGCAGTAGCTCTCCGTGTCGGTGCCGACCGGTCCGTCATAAACCGCTGTGGAATTGACGCTTTTCAAGACACTCTCTATGTCCAATCCAACAggcaattttatagggactCCTTCGTCACGGGCACCATTGACTTTATCTTTGGAGACGCAGCTGTTGTGTTTCAGAAGTGCCAGCTGGTGGCCCGAATGCCCTTGAGTAAGCAGTATAACGTGATCACAGCCCAAGGACGAGAGAATTCAACACATAATTCAGGCATTTCCATTCAGCAATGTGACATTATACCTAGCATGGATCTCAAGCCTGCCATGGGCTCCATTAAAACCTTTTTGGGCCGCCCATGGAAGAATTTCTCCCGAACCGTTGTGCTGGAATCCTTTATAGACAGTCATGTTGACCCAACAGGCTGGGCAGAACGGGATGCCGATCATAAGAGCTATTTGGAAACCTTGTATTTTGGAGAATACATGAATAACGGACCAGGCGCAAATACCAGCAAAAGAGTGAATTGGACTGGTTACCATATCATCACAACTGAAGAGGAGGCCAGCCAATTCACAGTAAAACAGCTCATCAATGGTGATCTATGGCTGCCTAGCACCGGGGTCAATTTCACTGATGGCCTTTAG 1134 0.4815 MRSCGIILAALLSTSALCLAVLVAVWPPKVKQSIDGSLNGDFPPWVTSKDRRFLESTAGDINANVVVAQDGSGNFTTVVQAVASAPNNSNTRFIIYVKMGTYKENVQINSEKTNVMLLGDGMNATIITGSLNFVDGQDISVSATVGVDGNGFIAQDLCFKNTAGPQKGQAVALRVGADRSVINRCGIDAFQDTLYVQSNRQFYRDSFVTGTIDFIFGDAAVVFQKCQLVARMPLSKQYNVITAQGRENSTHNSGISIQQCDIIPSMDLKPAMGSIKTFLGRPWKNFSRTVVLESFIDSHVDPTGWAERDADHKSYLETLYFGEYMNNGPGANTSKRVNWTGYHIITTEEEASQFTVKQLINGDLWLPSTGVNFTDGL 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3120 377 Gene3D - 58 377 IPR012334 -
Ssu2g3120 377 ProSitePatterns Pectinesterase signature 2. 208 217 IPR033131 -
Ssu2g3120 377 PANTHER PECTINESTERASE 11 375 - -
Ssu2g3120 377 ProSitePatterns Pectinesterase signature 1. 89 108 IPR018040 -
Ssu2g3120 377 SUPERFAMILY Pectin lyase-like 62 376 IPR011050 -
Ssu2g3120 377 Pfam Pectinesterase 64 363 IPR000070 GO:0030599|GO:0042545
Ssu2g3120 377 PANTHER PECTINESTERASE 11 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3120 Ssu-Chr2 93131039 93134322 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3120 8 377 Carbohydrate Esterase AT1G11580 56.989 5.72e-153 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3120 K01051 - gmx:100815836 536.184