Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3118 ATGTTTCGGTATAGACGACATTGCTCTCTATTagttatgaatatatatatattttttgtagttGTGACGATGGTGAGGGTTAGTGTCTTGAATGATGCTCTCAAGAGCATGTACAACGCCGAGAAACGCGGGAAGCGCCAGGTCATGATTAGGCCATCCTCGAAGGTGATCATAAAATTCCTCTTGGTGATGCAGAAGCATGGGTACATTGGGGAGTTCGAGTATGTTGATGACCACAGGGCTGGCAAAATCGTGGTTGAATTGAATGGCAGGCTGAATAAGTGTGGGGTTATAAGCCCACGCTTTGATGTTGGTGTCAAAGAGATTGAAGGTTGGACTGCGAGATTGCTCCCCTCAAGACAGTTTGGGTATATTGTCTTGACAACCTCTGCTGGTATCATGGATCATGAAGAGGCTAGGAGAAAGAATGTTGGTGGTAAAGTGTTGGGTTTCTTCTACTag 462 0.4307 MFRYRRHCSLLVMNIYIFFVVVTMVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3118 153 ProSitePatterns Ribosomal protein S8 signature. 123 140 IPR000630 GO:0003735|GO:0005840|GO:0006412
Ssu2g3118 153 Gene3D - 93 153 - -
Ssu2g3118 153 Gene3D - 24 92 - -
Ssu2g3118 153 PANTHER BNAA02G06730D PROTEIN 24 153 - -
Ssu2g3118 153 Pfam Ribosomal protein S8 30 153 IPR000630 GO:0003735|GO:0005840|GO:0006412
Ssu2g3118 153 SUPERFAMILY Ribosomal protein S8 27 153 IPR035987 GO:0003735|GO:0005840|GO:0006412
Ssu2g3118 153 Hamap 30S ribosomal protein S8 [rpsH]. 25 153 IPR000630 GO:0003735|GO:0005840|GO:0006412
Ssu2g3118 153 PANTHER 40S RIBOSOMAL PROTEIN S15A 24 153 IPR000630 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3118 Ssu-Chr2 93103440 93104982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3118 24 153 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 97.692 3.31e-93 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3118 K02957 - gmx:100814599 261.536