Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3117 ATGGATGCAATTTCTTTGATCAGTAACAAGCACCAGAAGCATCGTGAGGGAGAGAATGCAAGCAGTATCAAGTTAGATGATCTACCTGTCGAGATTCTTGAAGAGATCATATCCAATCTGCCCATCAAAGATGCAGTTAGAACAAGTGTACTGTCCAGACGATGGGCGAAGCTATGGATGGGTGTCACAAAAATTGAGTTGGTAGAAGAAGCCTATGACAGGAGGCAACAGTTCACAGACTTTGTGGTGAAATTGCTTGCAGTTTTTAATCCCTCGTGCCTTAGAAATTTCTCTCTCGTATGTGACGTAAGGGAGGACACTCCTCAGGTTAATCGGTGGCTAAGTGGTTTCATCAAGCCTAAGGTTCAAGAATTAAGGCTTCATTTTGAAAGAGTTGAGGAACAATTGGTCTTCCCTGATCACCTGTTTACCTCCAATTCATTGACACATTTTCATCTTAGTATGCCGCATGTTATCAACCTtccttctttcatttattttcgcAGTCTTAGGACTTTGACTTTGAGACATGTTATATTCCCTGATACTTCCCCAACGCAAGAGCTTTTCTCTAGTTGCCCCTCCCTGGAGCGGTTGACCCTAATTGATTGTAGTTGGAAGAATGTTAGAGCTGTTTGTATTGTTAGTCCATCGCTTCAGACCTTGACCATAAGGGAGTGGAAAGACGAGGACGACGATTCTGTCAAGtctgatgatgaaaatgatgcAGTTGGTCAGAATGTTCCAACTTACTGCAAAATAGTGATCACTGGAAGTAACCTGAAAACATTCTCTTATGACGGCGACCTCCTAAATGATTATTTCTTATATTCCACAACGATCACTGATGGAACTGTTGAGGTTCACCCACCACCATACAATCTCGTGGACGCTGGTCATTTTGTGTTGAAACTTCTTCAAGCCCTCTCAAATGTGGGAAAGCTATCCGTTACTGACTTTGCTGCTGAGGAAGGGAGATTTGGAGCTTCTAACATCAACCATTTAGACCGTGAATCTTCTATTCTTgccaaAAAGCTAATGAACTTGTCCATTGACAGAGTTTGGGACTCAATGGTGGCTTTAACAAAACAAACCATTGAGTCACATCAAGATACACGCACATGGCTAAGCATCGTGGTCACTAACCATGTGACTTGCTTCGATGGATTAAAAAGGGGAACTCAAGCCATTATGGAGGCTAAACTTGAGTACTTGGTGTCCAGAGTAAGAACCTCTTTGGCCATGCCTCTTGTTGTTTTGCCTCCAAAGTTTGAACAAATCATTTATGAGCCACTAAATAGGAACTTCCCCTCATGGGTGACATGCAAGGACCAGAGGCTTTTGGAGTCTATGGTCGGGGACATCAATGCTAATGTTACGATGGCTCAAGATGGAAGTGGCAACTTCAACTCTGTGATCGAGACTGTGGTTGTGGCATCCACAcccaataataacaacaacacaagAGCAAGAACCTCTATCACCATGCTTGTTGTTTTGCCTCCCAAGGTTGAACAAATCATTGATGAGCCACTAAATGGGGACTTCCCCATATGGGTTACAAATAAGTACTGA 1575 0.4121 MDAISLISNKHQKHREGENASSIKLDDLPVEILEEIISNLPIKDAVRTSVLSRRWAKLWMGVTKIELVEEAYDRRQQFTDFVVKLLAVFNPSCLRNFSLVCDVREDTPQVNRWLSGFIKPKVQELRLHFERVEEQLVFPDHLFTSNSLTHFHLSMPHVINLPSFIYFRSLRTLTLRHVIFPDTSPTQELFSSCPSLERLTLIDCSWKNVRAVCIVSPSLQTLTIREWKDEDDDSVKSDDENDAVGQNVPTYCKIVITGSNLKTFSYDGDLLNDYFLYSTTITDGTVEVHPPPYNLVDAGHFVLKLLQALSNVGKLSVTDFAAEEGRFGASNINHLDRESSILAKKLMNLSIDRVWDSMVALTKQTIESHQDTRTWLSIVVTNHVTCFDGLKRGTQAIMEAKLEYLVSRVRTSLAMPLVVLPPKFEQIIYEPLNRNFPSWVTCKDQRLLESMVGDINANVTMAQDGSGNFNSVIETVVVASTPNNNNNTRARTSITMLVVLPPKVEQIIDEPLNGDFPIWVTNKY 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3117 524 SMART fbox_2 28 67 IPR001810 GO:0005515
Ssu2g3117 524 ProSiteProfiles F-box domain profile. 22 75 IPR001810 GO:0005515
Ssu2g3117 524 SUPERFAMILY L domain-like 120 226 - -
Ssu2g3117 524 MobiDBLite consensus disorder prediction 1 20 - -
Ssu2g3117 524 CDD PMEI-like_4 329 415 - -
Ssu2g3117 524 PANTHER OS11G0201299 PROTEIN 13 326 - -
Ssu2g3117 524 Gene3D Ribonuclease Inhibitor 107 237 IPR032675 -
Ssu2g3117 524 Gene3D Invertase/pectin methylesterase inhibitor family protein 300 418 IPR035513 -
Ssu2g3117 524 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 345 414 IPR035513 -
Ssu2g3117 524 PANTHER OS11G0201299 PROTEIN 13 326 - -
Ssu2g3117 524 SUPERFAMILY F-box domain 25 100 IPR036047 GO:0005515
Ssu2g3117 524 Gene3D - 18 61 - -
Ssu2g3117 524 Pfam F-box domain 25 60 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3117 Ssu-Chr2 93060534 93071938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3117 294 486 Carbohydrate Esterase AT1G11580 35.149 5.39e-20 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3117 - - ccaj:109799833 361.688