Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3114 ATGGGTACGATGCTACAAGCCATTGTGACTGTGCTTCTTCTCCTTATGCTTCTTCTCATCAtcatcttcctcttctttctcttcaaacCATGGCGCTTCTTTTTCTCTTCGCGTTTCCGCTCCTCTATCAAGAGCGAGCTAGAGAGGCCCCTTTGTGCGGACGAAGATGACGCAAATGTGTCACCGTTTAATCAGAGCAATGAATTGCCTAGAGATTATGATCTTGAGGGTGCCTGTTACCCTAGTGAAGCTCATTTTCGTTCACCTCGAACCCATGGCCAAGGACTTGTTCATAAGCAAAGGCTTCAACCCTTTTCTGCTTCACCTAACATGCCCCAGGGTGATACTTTGGTTGTGGATGTGATCTCTGATCCTTCCTCTGAGGATGTTGATGTTGCTCAAACGCTTAAGCTTCCCACTGCTCATTTAGCTCAAATTCAAAAGCATGACCCGcccaattttcaaaatgaaagagTGCAGGACTTTCTGCAAAGAGATATCTCCGATCAAAGAAGTTGCCTCACTCTGGAGGTTATCAGCGGCCCTTCTCAGGGACTTCGTTGTTCTGTACAGTCGACAAATCCCTCTCGTCTACCGCTAACCTTGGGAAGAGTTTCTCCGAGTGATTTGTTGATGAAGGATTCGGAAGTGTCCGGAAAGCACGCATTAATAAAGTGGAATTTGGATACAATGAAATGGGAGTTGGTGGATATGGGTAGCCTGAATGGAACACTGTTGAATTCTAAGCCAATCAACCATCCAGACGCTGGAAGCAGGAATTGGGGAGATTCAATGAATCTTGCTAATGGAGATATCATAACACTTGGAACAACATCAAAAGTAATGGTTCATATTACTTCGCAAACTCAGCATCACATTCCCTTTGGAGTTGGTATGGCATCAGATCCCATGGCTTTGCGTCGAGGAGGAAAAAAGCTTCCTATGGAAGACGTTTGCTATTATCAATGGCCTCTACCTGGGCTGGATCAGTTTGGACTTTTTGGCATTTGTGATGGGCATGGTGGAGATGGGGCTGCTAAATCTGCTAGCAAaCTTTTTCCTGAGATAATTGCTAGTATATTGTTGGATTCATTAAAAAGGGAGAGGGTTTTATCACTCTGTGATGCTTCAGATATTCTTCGAGATGCATTTTCTCAAACAGAAGCACACATGAATCACTATTATGAGGGATGTACAGCAACAGTGCTTCTGGTGTGGACTGATGGTaatgaaaacttttttgcaCAATGTGCTAATGTTGGAGACTCCGCCTGTATTATGAGTGTGAATGGGAAACAAATCAAGATGACAGAAGATCACAAGATAACAAATTATTCTGAAAGACTCAGAATTGAAGAGACAGGTGAACCATTAAAAGATGGGGAAACACGTCTATATGGTATAAATCTGGCAAGAATGCTTGGGGACAAATTCCTGAAACAGCAGGATTGCCGGTTCAGTTCAGAACCTTACATAAGTCAAGTTGTGCATATTGATCAAGCAAGCAAGGCTTTTGCTATTCTAGCTAGTGATGGGTTATGGGATGTCGTCAGCGTGAAGAAGGCAATTCAGCTTGTGTTCCAGATGAAGGAGAGAAattcagagagagagagtacaGCAGAAAAGACTGCTAGTTTGTTGTTGAACGAGGCTAAAACACTCAGAACAAAGGATAATACATCTGTAATTTTCTTAGATTTTGATACCTTCAACAGATTCTCTTGTAAAGTTGAATCCTAG 1740 0.4098 MGTMLQAIVTVLLLLMLLLIIIFLFFLFKPWRFFFSSRFRSSIKSELERPLCADEDDANVSPFNQSNELPRDYDLEGACYPSEAHFRSPRTHGQGLVHKQRLQPFSASPNMPQGDTLVVDVISDPSSEDVDVAQTLKLPTAHLAQIQKHDPPNFQNERVQDFLQRDISDQRSCLTLEVISGPSQGLRCSVQSTNPSRLPLTLGRVSPSDLLMKDSEVSGKHALIKWNLDTMKWELVDMGSLNGTLLNSKPINHPDAGSRNWGDSMNLANGDIITLGTTSKVMVHITSQTQHHIPFGVGMASDPMALRRGGKKLPMEDVCYYQWPLPGLDQFGLFGICDGHGGDGAAKSASKLFPEIIASILLDSLKRERVLSLCDASDILRDAFSQTEAHMNHYYEGCTATVLLVWTDGNENFFAQCANVGDSACIMSVNGKQIKMTEDHKITNYSERLRIEETGEPLKDGETRLYGINLARMLGDKFLKQQDCRFSSEPYISQVVHIDQASKAFAILASDGLWDVVSVKKAIQLVFQMKERNSERESTAEKTASLLLNEAKTLRTKDNTSVIFLDFDTFNRFSCKVES 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3114 579 SUPERFAMILY SMAD/FHA domain 172 283 IPR008984 GO:0005515
Ssu2g3114 579 Pfam FHA domain 201 276 IPR000253 GO:0005515
Ssu2g3114 579 ProSitePatterns PPM-type phosphatase domain signature. 333 341 IPR000222 GO:0043169
Ssu2g3114 579 CDD PP2Cc 308 567 IPR001932 -
Ssu2g3114 579 PANTHER PROTEIN PHOSPHATASE 2C 34 578 IPR015655 GO:0004722|GO:0006470
Ssu2g3114 579 ProSiteProfiles Forkhead-associated (FHA) domain profile. 200 251 IPR000253 GO:0005515
Ssu2g3114 579 CDD FHA 174 282 IPR000253 GO:0005515
Ssu2g3114 579 SUPERFAMILY PP2C-like 309 568 IPR036457 -
Ssu2g3114 579 Gene3D - 306 576 IPR036457 -
Ssu2g3114 579 SMART FHA_2 199 251 IPR000253 GO:0005515
Ssu2g3114 579 ProSiteProfiles PPM-type phosphatase domain profile. 296 567 IPR001932 -
Ssu2g3114 579 Pfam Protein phosphatase 2C 307 560 IPR001932 -
Ssu2g3114 579 PANTHER PROTEIN PHOSPHATASE 2C 70 34 578 - -
Ssu2g3114 579 Gene3D - 168 305 - -
Ssu2g3114 579 SMART PP2C_4 290 565 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3114 Ssu-Chr2 92973282 92980814 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3114 26 569 PP2C-type Phosphatase Gene Family AT5G19280 58.217 0.0 645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3114 K01090 - gmx:100170642 981.474