Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3113 ATGGAGCAAGCAGTGTCACTGATTGGTGCCCTCAACCTCGTATCCCGCAACCTCCCTCTTCCCCCAGACCTCTTTCACACCGTTTCTTCTATCTATCACCGATCTGACCCTCCCAACTCCTCgGCCGATGCAGATGCAGGGAATTCCGCGCCGGCAGAAGATTTGTTGGCCGACCTTCAAGATGCGCTGTTGAAGCAACGTCCTAACTGCGCCTCCGGTCCCAAATTGAACAAAACAATGGAAAGCCGTTATCAGAGTCAGCTTCGGCACCGCTTAACCGAACTGCAAGGATTGCCTTCAAGCAGGGGAGAGGACCTACAGACAAGGTGCCTGCTTGAGCTTTATGGACTAAAGCTGGCTGAGTTGCAGAAGAAGGTGCGGAGAGACGTGAGTTCTGAATACTGGCTCAGTGTTAAATGTGCATATCCTGACAGGCAATTGTTTGATTGGAGCATGATGCGGTTGCGTCGTCCGCTGTATGGAGTTGGAGATCCATTTGCCATGGACGCCGATGATCAAATAAGGAAGAAACGGGATGCTGAGAGACTATCAAGATTGGAAGAGCAGGCAAAAAATCATATAGAGACCAGAAAAAGAAGATTTTTTGCAGAAATACTGAATACTGTCCGTGAGTTCCAATTACAAATTCAAGCTTCTTTGAAGCGGAGAAAACAGAGAAATGATGGTGTCCAGGCATGGCATGGAAGGCAAAGACAACGTGCAACACGGGCAGAGAAATTGAGATTCCAAGCCTTAAAGGCTGATGATCAGGAAGCTTACATGAGAATGGTAAAAGAGAGTAAGAATGAAAGATTGACTTTGCTTCTTGAAGAAACAAATAAACTACTTGTAAATTTGGGAGCAGCCGTTCAACGTCAAAAGGACTCAAAACAATCAGATGGTATTGAACCTTTGGGAGATTCAGAAACTGATTTACCCGAGTCAGATGGATTGAAGAATGGAATTTCTAAGGAATCACCTCTTGAGGAAGATGTGGATTTGATAGATTCTGATCATAATGGTGGTGATACTAGTGATTTACTTGAAGGTCAGCGGCAATACAATTCTGCCATACATTCAATTCAAGAAAAGGTAACTGAGCAGCCATCTATTCTTCAAGGTGGAGAATTAAGACCATACCAGCTAGAAGGCCTACAGTGGATGCTTTCTTTGTTTAATAACAACTTAAATGGAATATTGGCTGATGAAATGGGGCTTGGGAAGACAATACAAACCATCTCATTGATAGCATATCTTATGGAACACAAGGGTGTGACTGGTCCTCACTTGATTGTGGCTCCAAAAGCTGTTCTGCCAAATTGGATCAATGAATTCTCAACATGGGTTCCTAGCATCACAACCGTTCTTTATGATGGACGGCTGGATGAGAGGAAAGCAATGAAGGAAGAATTGTCAGGGGAGGGGAAATTTAATGTTCTGATAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAAAATCCATTGGCGCTACTTGATTGTGGATGAAGGGCATCGATTGAAGAATCATGAGTGTGCTCTAGCAAGAACCCTGGACTCTGGCTATCACATTCAACGAAGACTTCTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAGGAATTGTGGTCCCTGCTCAATTTTCTCCTTCCAAACATTTTCAATTCAGTTCAGAATTTCGAGGACTGGTTTAATGCTCCCTTTGCAGATCGAGTTGATGTCTCTCTAACCGATGAAGAACAGTTATTGATCATTCGGCGTCTGCATCAAGTGATAAGGCCCTTCATATTGAGAAGGAAAAAGGATGAGGTGGAAAAATTTCTTCCTAGCAAATCTCAGGTCATACTCAAATGTGACTTGTCAGCCTGGCAGAAAGTATATTATCAACAAGTCACTGATGTGGGCAGAGTTGGCTTAGACAATGGTTCTGGAAAATCAAAAAGTCTACAGAACTTGACAATGCAACTCAGAAAATGTTGTAACCATCCCTACCTCTTTGTGGGTGACTATGATATCTATAAACACAAGGAGGAGATTGTCAGAGCATCAGGGAAGTTTGAACTTCTTGACCGTTTGCTTCCAAAACTTCGTAGAGCTGGTCACAGAGTCCTCCTTTTTTCACAGATGACTCGTCTCATGGACATTCTTGAAATTTATCTGCGActtcatgattttaaatttcttagaCTTGATGGCTCAACAAAAACTGAGGAAAGAGGTTCCCTACTACGGAAATTCAATGCACCTGATTCTCCGTACTTTATGTTTCTCTTGAGCACCCGTGCTGGAGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATCTTTGACAGCGATTGGAACCCACAAATGGATCAACAAGCTGAGGATCGAGCCCATCGCAttggacaaaaaaaagaagtcagAGTTTTTGTGTTAGTTAGTGTTGGATCAATTGAAGAGGTGATTTTAGAGCGTGCTAAACAAAAAATGGGTATTGATGCCAAAGTCATTCAGGCAGGGCTTTTTAACACTACTTCAACAGCACAAGACAGAAGAGAAATGTTGGAGGAGATTATGCGTAGGGGTACTAGCTCACTTGGTACAGATGTGCCAAGTGAGCGAGAAATTAACCGCCTTGCAGCTCGATCTGATGAGGAATTTTGGCTGTTTGAGAAAATGGATGAAGAGCGAAGGCAAAAGGAGAATTACAGATCTCGTCTCATGGACGAACATGAACTGCCAGATTGGGTATACTCTCCACTAAATAAGGATGATAAGGTCAAAGTTTTTGACAGTGGTAGTGTTACCGGAAAgcggaaaagaaaagaagtgataTATGCAGATACATTAAGTGATCAACAATGGATGAAGGCTGTGGAGAACGGACAGGACATATCTAAGCTTTCAGtcaaagggaaaagaagaatCCACCTCCCTGTTGACAACCATTCACAAGCTAGTGATGACATGGGGACAGAAGAACGGTTATTAGAGTTAAGGAATGAGAGTTTCCCCATGGCAAATGAGAGATCAAGTGAAGATACTTTTGACGTGATCCCGACCTCTAAGAGACTCAAGCCTGAAGAAATGAATTCCCAGAAACATGAAAACGAGGATGTCAGAGTTGGTAGTTTGAACGAGCATATATTTTCCTGGAATACTCACAGAAAGAAGAGATCAAGCTATCTTGGCCAGGGTTCATTCTCTGATAGTAGAGTGCAGAATGCAAATGGAAGAGCAAACTGGAACTGA 3249 0.4186 MEQAVSLIGALNLVSRNLPLPPDLFHTVSSIYHRSDPPNSSADADAGNSAPAEDLLADLQDALLKQRPNCASGPKLNKTMESRYQSQLRHRLTELQGLPSSRGEDLQTRCLLELYGLKLAELQKKVRRDVSSEYWLSVKCAYPDRQLFDWSMMRLRRPLYGVGDPFAMDADDQIRKKRDAERLSRLEEQAKNHIETRKRRFFAEILNTVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDSKQSDGIEPLGDSETDLPESDGLKNGISKESPLEEDVDLIDSDHNGGDTSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRPYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMEHKGVTGPHLIVAPKAVLPNWINEFSTWVPSITTVLYDGRLDERKAMKEELSGEGKFNVLITHYDLIMRDKAFLKKIHWRYLIVDEGHRLKNHECALARTLDSGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKFLPSKSQVILKCDLSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDIYKHKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLHDFKFLRLDGSTKTEERGSLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMDEHELPDWVYSPLNKDDKVKVFDSGSVTGKRKRKEVIYADTLSDQQWMKAVENGQDISKLSVKGKRRIHLPVDNHSQASDDMGTEERLLELRNESFPMANERSSEDTFDVIPTSKRLKPEEMNSQKHENEDVRVGSLNEHIFSWNTHRKKRSSYLGQGSFSDSRVQNANGRANWN 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3113 1082 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 389 555 IPR014001 -
Ssu2g3113 1082 Pfam SNF2-related domain 380 668 IPR000330 GO:0005524|GO:0140658
Ssu2g3113 1082 SMART ultradead3 373 566 IPR014001 -
Ssu2g3113 1082 Pfam Snf2-ATP coupling, chromatin remodelling complex 895 955 IPR029295 GO:0042393
Ssu2g3113 1082 Gene3D - 608 908 IPR027417 -
Ssu2g3113 1082 PANTHER SNF2/RAD54 HELICASE FAMILY 2 1037 - -
Ssu2g3113 1082 MobiDBLite consensus disorder prediction 1060 1082 - -
Ssu2g3113 1082 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 691 858 IPR001650 -
Ssu2g3113 1082 PANTHER ATP-DEPENDENT HELICASE BRM 2 1037 - -
Ssu2g3113 1082 Coils Coil 892 912 - -
Ssu2g3113 1082 MobiDBLite consensus disorder prediction 323 344 - -
Ssu2g3113 1082 SMART helicmild6 717 801 IPR001650 -
Ssu2g3113 1082 Coils Coil 176 196 - -
Ssu2g3113 1082 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 602 IPR027417 -
Ssu2g3113 1082 MobiDBLite consensus disorder prediction 293 344 - -
Ssu2g3113 1082 CDD SF2_C_SNF 679 812 - -
Ssu2g3113 1082 Gene3D - 346 601 IPR038718 -
Ssu2g3113 1082 Pfam Helicase conserved C-terminal domain 688 801 IPR001650 -
Ssu2g3113 1082 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 604 855 IPR027417 -
Ssu2g3113 1082 SMART SnAC_2 894 955 IPR029295 GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3113 Ssu-Chr2 92965259 92971855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3113 674 829 RAD5 or RAD16-like Gene Family AT5G43530 36.709 1.12e-21 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ssu2g3113 SNF2_N 2.7e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3113 - - gmx:100775993 1978.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g3113 2 92965259 92971855 Ssu2g3113 2 92965259 92971855 ECH