Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3110 ATGGAGCTTCAGAGGCGACCAGATCAGTGCCTCCCGGAGAGGAAAGGGCAGAAGAGGAAGCTCGAGGAGGAATTCGAAGAGGACCGACAGATCTCCGCGCCTCCCACCGGCGACGCTCGTGACGCTCTCCTCTCCGACGTCAGGGAACAAGTTTTCGTCCTCGATTCCACTTTCTCGTGGAAGGAATCCGACCGTGCTGCCGCGAAGCGCGCCACGCACGCCCTCGCCGATCTCGCCAAAAACGAGGAAGTCGTGAACGTGATTGTTGAAGGAGGCGCCATTCCGGCTTTGGTTAAGCATCTTCAAGCGCCTCCTCTGGCTGAAAGCGACCGTGTGCAGCGGCCAATGCCGTTTGAGCACGAGGTCGAGAAAGGGAGTGCTTTCGCTCTTGGACTTCTCGCCGTCAAGCCAGAACATCAGCAACTCATTGTTGACAGCGGTGCCTTAAAACATCTTGTTGATCTTTTGAAGAGGCATAAGAATGGCTTAACATCTCGTGCCATTAATAGTCTCATTCGTAGGGCTGCAGATGCGATCACTAATCTTGCTCATGAGAACAGCAGCATGAAGACTCGTGTCAGGATGGAAGGTGGGATTCCACCACTTGTTCATTTGCTTGAATTTGCGGATACAAAGGTGCAAAGAGCTGCTGCTGGTGCATTGCGAACCCTTGcttttaaaaatgatgaaaataaaaatcagATTGTTGAATGCAATGCCCTTCCAACTCTGATTCTGATGCTTCGTTCAGAAGATGCTGCTATTCATTATGAAGCGGTTGGCGTGATTGGAAATCTGGTCCACTCTTCCCCTACTATAAAGAAAGAAGTTCTTCTTGCTGGAGCCTTACAACCTGTTATTGGATTACTTAGCTCCTGTTGTTCTGAAAGCCAGAGGGAAGCAGCCTTGTTACTTGGACAGTTTGCTGCAACTGATTCAGACTGCAAGGTTCACATTGTTCAGAGAGGTGCTGTACGACCTCTGATAGAGATGCTTCAGTCCCCTGATGTTCAGCTAAAAGAAATGTCTGCCTTTGCATTGGGGAGATTGGCCCAGgACACACATAACCAAGCTGGTATTGCACACAATGGTGGCTTGGTGCCATTACTGAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCCGATTTTATTAGGGTAGGGGGAATTCAGAGACTGCAGGATGGAGAGTTTATAGTTCAAGCAACTAAAGATTGTGTTGCAAAGACATTGAAAAGATTAGAAGAGAAGATTCATGGCCGAGTGCTGAACCATTTGTTATATCTCATGCGAGTTTCAGAAAAGGCTTTCCAAAGACGAGTTGCTTTGGCTCTTGCTCACCTTTGTTCTGCAGATGAtcagagaaaaatatttattgatcaCCATGGTTTGGAGTTGCTTATGGGGCTTCTTGGCTCTTATAACCCAAAGCAACAACTTGATGGAGCTGTGGCATTATGCAAGTTGGCCAATAAAGCTATGACTCTGTCTCCTGTAGATGCTGCACCCCCATCTCCAACGCCCCAGGTCTATTTGGGAGAGCAGTATGTAAACAATGCTACCTTGTCTGACGTTATATTTTTGGTTGAAGGCAAACGGTTTTATGCTCACAGAATCTGCCTGCTTGCATCTTCAGACGCATTTCGTGCAATGTTTGATGGTGGTTATAGGGAGAAGGAGGCACGGGACATAGAGATTCCAAACATTAGATGGGAGGTTTTTGAGCTGATGATCAGATTTATATACACTGGATCAGTTGATGTCACTCATGATATTGCCCAAGATCTCCTCCGAGCAGCTGATCAATATCTTTTAGAAGGACTTAAGAGACTCTGTGAGTACACGATTGCACAGGATATATCACTGGAGAATGTGTCGAGTATGTATGAACTTTCAGAATCCTTTAACGCAATATCATTGAGGCACACATGCATCCTTTTTATCTTGGAGCACTATGATAAATTGAGTGGAAAGCCAGGACACACTCATCTAATTCAGCATATAATACCCGAGATCCAGAATTACTTTGTTAAAGCTCTTACAAAGGCCAATTCCAACATCGAGCCGTAG 2121 0.4536 MELQRRPDQCLPERKGQKRKLEEEFEEDRQISAPPTGDARDALLSDVREQVFVLDSTFSWKESDRAAAKRATHALADLAKNEEVVNVIVEGGAIPALVKHLQAPPLAESDRVQRPMPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALKHLVDLLKRHKNGLTSRAINSLIRRAADAITNLAHENSSMKTRVRMEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPTIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLKEMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGIQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKAFQRRVALALAHLCSADDQRKIFIDHHGLELLMGLLGSYNPKQQLDGAVALCKLANKAMTLSPVDAAPPSPTPQVYLGEQYVNNATLSDVIFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKEARDIEIPNIRWEVFELMIRFIYTGSVDVTHDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSESFNAISLRHTCILFILEHYDKLSGKPGHTHLIQHIIPEIQNYFVKALTKANSNIEP 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3110 706 MobiDBLite consensus disorder prediction 1 40 - -
Ssu2g3110 706 CDD BTB_POZ_ARIA_plant 527 642 - -
Ssu2g3110 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 147 197 IPR000225 GO:0005515
Ssu2g3110 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 197 232 IPR000225 GO:0005515
Ssu2g3110 706 ProSiteProfiles BTB domain profile. 540 607 IPR000210 GO:0005515
Ssu2g3110 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 92 148 IPR000225 GO:0005515
Ssu2g3110 706 Gene3D Potassium Channel Kv1.1; Chain A 521 669 IPR011333 -
Ssu2g3110 706 SUPERFAMILY ARM repeat 68 410 IPR016024 -
Ssu2g3110 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 323 365 IPR000225 GO:0005515
Ssu2g3110 706 SUPERFAMILY POZ domain 532 634 IPR011333 -
Ssu2g3110 706 Gene3D - 209 412 IPR011989 -
Ssu2g3110 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 364 406 IPR000225 GO:0005515
Ssu2g3110 706 Pfam BTB/POZ domain 533 635 IPR000210 GO:0005515
Ssu2g3110 706 Gene3D - 42 207 IPR011989 -
Ssu2g3110 706 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 702 IPR044282 -
Ssu2g3110 706 SMART BTB_4 540 637 IPR000210 GO:0005515
Ssu2g3110 706 Gene3D - 414 516 IPR011989 -
Ssu2g3110 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 239 281 IPR000225 GO:0005515
Ssu2g3110 706 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 702 - -
Ssu2g3110 706 SUPERFAMILY ARM repeat 438 611 IPR016024 -
Ssu2g3110 706 MobiDBLite consensus disorder prediction 1 34 - -
Ssu2g3110 706 Pfam Armadillo/beta-catenin-like repeat 312 351 IPR000225 GO:0005515
Ssu2g3110 706 Pfam Armadillo/beta-catenin-like repeat 192 225 IPR000225 GO:0005515
Ssu2g3110 706 Pfam Armadillo/beta-catenin-like repeat 228 267 IPR000225 GO:0005515
Ssu2g3110 706 SMART arm_5 312 352 IPR000225 GO:0005515
Ssu2g3110 706 SMART arm_5 353 393 IPR000225 GO:0005515
Ssu2g3110 706 SMART arm_5 468 508 IPR000225 GO:0005515
Ssu2g3110 706 SMART arm_5 136 184 IPR000225 GO:0005515
Ssu2g3110 706 SMART arm_5 228 268 IPR000225 GO:0005515
Ssu2g3110 706 SMART arm_5 81 135 IPR000225 GO:0005515
Ssu2g3110 706 SMART arm_5 186 226 IPR000225 GO:0005515
Ssu2g3110 706 SMART arm_5 270 310 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3110 Ssu-Chr2 92892321 92899471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3110 296 410 U-box Gene Family AT3G46510 30.769 2.04e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Ssu2g3110 BTB 2.3e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3110 - - gmx:100812456 1313.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g3110 2 92892321 92899471 Ssu7g0612 7 12469922 12476055 PCT