Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3099 ATGTTGTCTGGAGCCACGATTTTCAACATGAAACGCTTGATTGGCAGAGTTGATACTGACCCAGTTGTCCATGCATGTAAGAATCTCCCATTTCTAGTGCAGACTTTGGACATTGGTGTTCGGCCATTTATTGCTGCATTAGTGAACAATATGTGGAGATCCACCACTCCAGAAGAAGTACTGGCAATATTTCTGGTGGAATTAAGAGCAATGGCTGAAGCTCAGCTGAAACGACGATTAAGAAATGTGGTTCTTACAGTTCCAGTTTCATTCAGTCGATTTCAGCTAACCCGGCTAGAGCGTGCTTGTGCCATGGCGGGCCTTCATGTTCTCAGGCTGATGCCTGAACCAACAGCTGTGGCTTTGTTGTATGGACAGCAACAACAGCAGACTTCTCATGAGAATATGGGCAGTGGAAGTGAGAAAATTGCTCTCATTTTCAATATGGGTGCTGGTTATTGTGATGTTGCTGTCACTGCTACAGCGGGAGGAGTATCACAGATTAAAGCCTTGGCAGGAAGTACCATTGGTGGTGAAGACTTGCTTCAGAATATGATACATCATCTGTTACCAGATTCTGAAATTCTATTTAAGAACCATGGggtcaaagaaattaaaaggatGGCCCTGCTTCGAGTTGCAACTCAGGATGCAATTCACCAGCTTTCCTCTCAGACCAGCACTCAGGTTGATATAGACTTGGGAGATGATTTGAAGATATGCAAGGCTGTTGACCGGGAGGAGTTTGAGGAGGTAAACAGAAAGGTATTTGAGAAATGTGAAAGCCTTATCATCCAGTGTTTGCGAGATGCCAAGGTAGAAGTTGAAGATGtaaatgatgtgataattgTAGGTGGATGCTCTTATATCCCAAGGGTGAAGAGTCTTGTTGCTAACATATGCAAAGGGAAGGAACTTTATAAAGGCATGAATCCTTTGGAAGCTGCTGTTTGCGGTGCAGCAGTGGAAGGAGCTGTCGCTTCAGGCATCAATGATCCCTTTGGGAACTTGGACTTGTTAACTATCCAAGCTACACCTCTTGCCATTGGGATTCGAGCCGATGGGAACAACTTTGTCCCTGTAATTCCAAAGGATACCACAATGCCAGCTCGGAAGGAGCTAGTTTTCACAACTATTCATGATAATCAAACTGAAGCATTGATCATTGTCTATGAAGGTGAGGGGAAAAAGGCAGAAGAAAACCACCTATTGGGATATTTCAAGATAATGGGAATACCTGCAGCGCCTAAAGGAGTCCCAGAAATCAATGTGTGCATGGACATAGACGCTGCAAGCGTGCTAAGAGTTTTAGCTGGTGTCGTGATGCCTGGTTCTCGCCAACCTGCAATTCCTGTTATGGAAGTAAGGATGCCAACAGTGGATGATGGGCATGGTTGGTGTGCTGAGGCGCTTAATAGAACCTATGGTGCCGCACTGGATTTGGTTACTCTGCAGAAGAAGGCATAA 1467 0.4404 MLSGATIFNMKRLIGRVDTDPVVHACKNLPFLVQTLDIGVRPFIAALVNNMWRSTTPEEVLAIFLVELRAMAEAQLKRRLRNVVLTVPVSFSRFQLTRLERACAMAGLHVLRLMPEPTAVALLYGQQQQQTSHENMGSGSEKIALIFNMGAGYCDVAVTATAGGVSQIKALAGSTIGGEDLLQNMIHHLLPDSEILFKNHGVKEIKRMALLRVATQDAIHQLSSQTSTQVDIDLGDDLKICKAVDREEFEEVNRKVFEKCESLIIQCLRDAKVEVEDVNDVIIVGGCSYIPRVKSLVANICKGKELYKGMNPLEAAVCGAAVEGAVASGINDPFGNLDLLTIQATPLAIGIRADGNNFVPVIPKDTTMPARKELVFTTIHDNQTEALIIVYEGEGKKAEENHLLGYFKIMGIPAAPKGVPEINVCMDIDAASVLRVLAGVVMPGSRQPAIPVMEVRMPTVDDGHGWCAEALNRTYGAALDLVTLQKKA 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3099 488 ProSitePatterns Heat shock hsp70 proteins family signature 3. 281 295 IPR018181 -
Ssu2g3099 488 Gene3D - 8 63 - -
Ssu2g3099 488 PRINTS 70kDa heat shock protein signature 419 435 - -
Ssu2g3099 488 PRINTS 70kDa heat shock protein signature 278 294 - -
Ssu2g3099 488 PRINTS 70kDa heat shock protein signature 83 103 - -
Ssu2g3099 488 PRINTS 70kDa heat shock protein signature 310 330 - -
Ssu2g3099 488 PRINTS 70kDa heat shock protein signature 338 357 - -
Ssu2g3099 488 PANTHER HEAT SHOCK 70 KDA PROTEIN 8 1 487 - -
Ssu2g3099 488 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 340 446 IPR029047 -
Ssu2g3099 488 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 335 450 IPR029047 -
Ssu2g3099 488 PANTHER HEAT SHOCK PROTEIN 70KDA 1 487 IPR013126 GO:0005524|GO:0140662
Ssu2g3099 488 SUPERFAMILY Actin-like ATPase domain 141 326 IPR043129 -
Ssu2g3099 488 CDD HSP70_NBD 6 325 - -
Ssu2g3099 488 SUPERFAMILY Actin-like ATPase domain 4 127 IPR043129 -
Ssu2g3099 488 Gene3D - 5 325 - -
Ssu2g3099 488 Gene3D - 129 307 - -
Ssu2g3099 488 Gene3D Actin; Chain A, domain 4 178 259 - -
Ssu2g3099 488 Pfam Hsp70 protein 5 439 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3099 Ssu-Chr2 92707914 92709380 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3099 6 438 Calmodulin-binding Proteins AT3G12580 39.503 1.41e-94 298