LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu2g3097	ATGCCCATCTCTATGGTCTTTGAGTGGGTCTGCAATTGTTTCCATCTAATTAATTGGACAAGAAAATTGGCCGTAGCACGGGTGGAACGAACTTACTTGTGGGCCAAGTTAGCTGCTTCTTTGAGGGCCGTCTTATTTCAACTTCCAATCAATCCTGTGGAAGAAGACTCTTCACATACAGcttcttttgttgttatttttttgtacacCTTGACCTTCTTCGTCCCTCACTCCACATCAAATGCAATGTCTTCAGCTAGCTTTCTGCGTTGCATTCTTGCACTACTTTCACTTTCACTTCTCAATGGCTTACATGCCATAGAAATAAAACCAAATACAAACATCACTGCAGGATCAAATTCTACCTGGAAGTCAGGCTCGGGTGATTTTGAATTTGGATTCTACCGTCTTCCCAGTGGTCTCTTTCTTGTGGGAATATGGTTTGGAAGAATCCCAGAGATAACACTGGTATGGTACCAGAGTCCCCCCGTGGAACCAAATTCCCAAATCCAATTCACTTCTGCTGGACAACTTGTGGTAGCATACCCAAACGGATCTACTGCTCAGACAATATACAGTGGAGGAAACGGTGGTGCTCCAACTTCTGCCCAAATGAAAGATGATGGCAATTTTGTCATGATGGACTCCAACTCAATATCTGTGTGGGAGAGTTTCAACTTTCCCGCCAACACAATCTTACCGAACCAAACCTTGCAGAGTAATCAAATCCTCTACTCCAAGGGGAAAGGACCTTCAAACTACTCGTTGGGAAATTTCATGTTACAAATGCAAACCGATGGCAACTTGCTGCTCAAAGCGTACCAATGGTCTGACCCTGCTTATTGGTACACTTCAGCCGTATACCCCAGTGACAATGTGAATTTGGTGTTTAATGTTACTAGTGCTCTCATGTACCTTGTCAGCGGCACTAGGAACATCCACTCTCTAACCCACAGCACTCCAACCCCGGTGGAGGATTACTATCACCGTGCTACAATAGATGAGAATGGCAATTTCCAGCAATATGCATATCACAAAAGGAATGGCACCGGGTGGAGGAGGGTTTGGAGAGCTGTGGAGGATCCTTGCAGAGTGGATGCTGTTTGTGGTGTGTATGGTTTGTGCACTTCTCCTGACAATGAATCAGTCAAGTGTGAGTGCATTCCAGGTTATATCCCATTGGATCATGAAGATGTGTCCAAAGGGTGTCACCCACCAGCTGTAATCAATTACTGTGTAGAGAAGAACTTCACGCTGCAGGTGTTTGACGACACTGATTTCCAATTTGATACTAATTTTGTTGGCATAACTACTGCTGATTTGGAAGGTTGTAAGAAGGCTGTAATGGATGATTGTAATATCATCGCTGCAACTTATAACGAGTCCACCTCCACATGTGCCAAGAAGAAGCTGCCCTTGCTGAATGCTAGAAATAGCTCTTCTTCAAAGGGACAGAAAGCACTACTTAAAGTTCTTAACAGTGTTGAGTCTGGGACATCCAATGTTCCCAAGAAGAAGAGTTTCAGCGTAAGAATCTTTTTGAAGGTTCTGCTTGCAGTTACTGCCACTCTTGCCTGTTTCTTTGGTGCCCTTGCTGTCTACTATCATCCCTTTGCTCAGAGACtaacaagaagaaagaagtatCTGAATACAAATGCTATCGGAATCAACTTCAGAGAATTCACCTTCCAGGAGCTGCATGAAGCAACAAATGGATTCACTAGGATTCTTGGTATGGGGTCTTCAGGCAAAGTCTACTGTGGTGCTTTAATAATAGATGATGCAGAAATTGGTATTGCAGTAAAGAAACtggaaaagaaaattgagaaaagtgAAAGTGAATTCATGACTGAGCTCAAAATTATTGGCCGTACCCATCACAGAAATTTGGTGAGGCTTTTGGGCTTTTGCTTTGAAAGTAGCCATCGAATTCTTGTGTATGAGTTGATGCCAAACGGAGCACTGTCCAGTTTTTTGTTTCGAGAGGGAGAAAGGCCTCAATGGGGTCAGAGGATTGAAATGGCTCTTGGAGTCGCAAGAGGCTTACTATACTTGCATGAAGAGTGCCACACCCAAATCATACATTGTGATATCAAGCCCCAAAATGTGTTACTTGATGCCAATCACACAGCAAAGATTGCAGATTTTGGGCTTTCCAAGCTTTTGAACAAAGATCAAACTAGAACAAGCACTAATTTAAGAGGGACAATAGGGTATATGGCACCTGAATGGCTAAAGAGTGCACCAATAACTGCCAAAGTTGACATATACAGTTTTGGTGTTATGCTATTGGAGATTATTTGCAGCAGGAGGCACATCGAGTCTTGTCAAGATGGAAATGACAGTGAAGATGATGATTTGGTTCTTTCAAATTGGGTTTTACGGTGTGTGGTGTCTAGGAAACTAGAGGTAGTGGTGAGACATGACTCAGAAGTGCTGAATGATTTCAAGAGGTTTGAGGAAATGGCCTTGGTTGGACTGTGGTGTGTTCATCCAAATCCAGCTCTTAGACCTTCAATGAAGCAGGTGATGCAAATGCTAGATGGAACCGTGGAAGTTGGGGTTCCTCCTTTGGTTTATGATCAGATGATGGCAGACCAGGGCTTATAG	2610	0.4245	MPISMVFEWVCNCFHLINWTRKLAVARVERTYLWAKLAASLRAVLFQLPINPVEEDSSHTASFVVIFLYTLTFFVPHSTSNAMSSASFLRCILALLSLSLLNGLHAIEIKPNTNITAGSNSTWKSGSGDFEFGFYRLPSGLFLVGIWFGRIPEITLVWYQSPPVEPNSQIQFTSAGQLVVAYPNGSTAQTIYSGGNGGAPTSAQMKDDGNFVMMDSNSISVWESFNFPANTILPNQTLQSNQILYSKGKGPSNYSLGNFMLQMQTDGNLLLKAYQWSDPAYWYTSAVYPSDNVNLVFNVTSALMYLVSGTRNIHSLTHSTPTPVEDYYHRATIDENGNFQQYAYHKRNGTGWRRVWRAVEDPCRVDAVCGVYGLCTSPDNESVKCECIPGYIPLDHEDVSKGCHPPAVINYCVEKNFTLQVFDDTDFQFDTNFVGITTADLEGCKKAVMDDCNIIAATYNESTSTCAKKKLPLLNARNSSSSKGQKALLKVLNSVESGTSNVPKKKSFSVRIFLKVLLAVTATLACFFGALAVYYHPFAQRLTRRKKYLNTNAIGINFREFTFQELHEATNGFTRILGMGSSGKVYCGALIIDDAEIGIAVKKLEKKIEKSESEFMTELKIIGRTHHRNLVRLLGFCFESSHRILVYELMPNGALSSFLFREGERPQWGQRIEMALGVARGLLYLHEECHTQIIHCDIKPQNVLLDANHTAKIADFGLSKLLNKDQTRTSTNLRGTIGYMAPEWLKSAPITAKVDIYSFGVMLLEIICSRRHIESCQDGNDSEDDDLVLSNWVLRCVVSRKLEVVVRHDSEVLNDFKRFEEMALVGLWCVHPNPALRPSMKQVMQMLDGTVEVGVPPLVYDQMMADQGL	869

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu2g3097	869	SMART	serkin_6	571	847	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu2g3097	869	ProSiteProfiles	Bulb-type lectin domain profile.	108	226	IPR001480	-
	Ssu2g3097	869	SMART	blect_4	114	228	IPR001480	-
	Ssu2g3097	869	PANTHER	SERINE/THREONINE-PROTEIN KINASE	87	859	-	-
	Ssu2g3097	869	Pfam	D-mannose binding lectin	161	242	IPR001480	-
	Ssu2g3097	869	PIRSF	SRK	78	867	IPR024171	GO:0004674
	Ssu2g3097	869	ProSitePatterns	Protein kinases ATP-binding region signature.	577	603	IPR017441	GO:0005524
	Ssu2g3097	869	Pfam	S-locus glycoprotein domain	324	393	IPR000858	GO:0048544
	Ssu2g3097	869	ProSiteProfiles	Protein kinase domain profile.	571	851	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu2g3097	869	Gene3D	Transferase(Phosphotransferase) domain 1	650	856	-	-
	Ssu2g3097	869	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	87	859	-	-
	Ssu2g3097	869	Pfam	Protein kinase domain	575	845	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu2g3097	869	SUPERFAMILY	alpha-D-mannose-specific plant lectins	142	285	IPR036426	-
	Ssu2g3097	869	Gene3D	-	228	369	-	-
	Ssu2g3097	869	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	693	705	IPR008271	GO:0004672\|GO:0006468
	Ssu2g3097	869	Gene3D	-	105	227	IPR036426	-
	Ssu2g3097	869	CDD	STKc_IRAK	577	849	-	-
	Ssu2g3097	869	Gene3D	Phosphorylase Kinase; domain 1	545	649	-	-
	Ssu2g3097	869	SUPERFAMILY	Protein kinase-like (PK-like)	558	853	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu2g3097	Ssu-Chr2	92676926	92679535	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu2g3097	497	852	Receptor kinase-like Gene Family	AT5G45780	37.119	5.44e-66	229

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Ssu2g3097		Pkinase	8.1e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu2g3097	-		-	gmx:102662509	1278.85