Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3093 ATGGAATCGGGCGTGAGATCGAGAGGTTCTGGGGTTGTGGTGAAGAGCAGAAACTCCTCGGGTTGTTTAATTGTGCGAAAGAAAGGGGATGGGTTGGGTGCTACTGCTTCCACCTCTCGGAAGCTCTATGAATCGAAGAAAAGGGCCAACATCAACGTGTCTGTGTCCTTGAGTGATTCTGGATCAAGCGACGAGCTGCTGATGCCTCCTGGTAGAAGGCTCGGCCCTGAGACTATTCGGGTTTGCAATGGTTTGGCTGCCTCTGAGCGGGGTGGTAGTGAAATGAGTCGGAAGAGGGATAGAGTGGAACGAATTAGGGGTAGTGGGGAAGGTATTGCCGCGGAGAAAGGTTTGGAGCAGAGGGAAAGGAAGCGTAATAAATTGGATGTGTACGATTTTGATGAATACGATGGTATGGATGTGGAAAACATGAGGAGGAGGCATTTGGATGGTAATGGAGTTGGTCACGGAGGGGGAAGGTTTATGGGATCAGTGCATGCGGCTAGAAGTGGCATTGATAGGGAATTCAAAACAGGGTCAAGTGGACGTGTTCTTGATCACAGTAGGTTCAAGATGAACAGGGATGGAACTCGGCTACCTCTACCCTCGCAGAGGGAGAAGTTTAATTCGGACGAGTCCATTAGGGTTCAGGGGAAAAATGGTGTTTTGAAGGTAATGGTTAATAAGAAGGTGGGTGGGCCATCAGAACACTATGATCATCACAAACCCGTGGAAAGCAGGCAAAGGTTGAAGACTGAAGAGACTTCCAAGAGGTTGAAGACCGAAGAGACTGCCAAGAGGTTGAAGACCGAAGAGACTGCCAAGAGGAATGTTCCAATTCGTCCTTCGTCATACTTGGAAACGAAACCTGTTGGGAAACCAGGATTACCCAAGAGGCTGGAGAAGAAACGAATAGCATCAAGAAAATCATTGTCAAGCAAGGACAGTAAGGATGATGAGGGGGATTCAGATAACAGTGACACATCATTGAATCCGGGAATAAGAAATAGTGGAGCTCGTAAGCCTGCGAAAAAAATAGTCCCTGAGGATGAGCAGGCTCCTGTGCATGAAAAAGTCCCAACTACAAGaatgaaagaaggaaaaatcaaGCGTGGTAGTGGTACAGAAAAACAGAAACTGCGAGAACGAATAAGGGAGATGCTGCTGAGTTCAGGTTGGACCATAGACTATCGACCTCGAAGGAACAGAGATTATCTGGATGCAGTTTACATTAATCCAGCAGGTACTGCCTATTGGTCTATCATCAAGGCCTACGATGCGCTTCAAAAGCAATTGAATGATGATGCTAATGAGGCCAAGCCCAAAGGGGATAGTTCTTCTTTTGCTCCTATTGCAGATGAGGTGCTCAGTCAGCTAACAAGGAAAACTAGGAAGAAAATGgagaaagaattgaaaaagaagaaaagatatgATAGTGAAAAACCTCAAATAAGAAGATCTGCCAGCAACAAGCGTGATATGAATAGCATGGTTAGTGATAGCGACGGGGAGAAATTAAGCACCTTTATAAAGCAGGGAAGCaagtcaatgaaaaataaaatgtttgaaaatacCATTATCAGTGCTCGTTCTAAAATCCAGAATGCTACCCATCACTCAAgtgatggaaaagaaaaatcattatttgGATGTGATCCTCATATACATGGACGGAAGAGTAAAAAACATGGAAGATGTACCTTGTTAGTTCGCAGTTCTAACAAAGGATCAAATTCAGAATCTGATGGCTTTGTCCCATATATGGGCAAACGGACAGTTCTTTCCTGGTTGATTGATTCTGGAACAGTAGAGTTAAGCCAAAAGGTTCAGTACCGCAGACGGAAGAAAGTCCTGCTAGAAGGGTGGATCACAAGAGATGGCATTCATTGTGGCTGCTGTAGTAAGATCCTCACAGTTTCAAAGTTTGAGCTTCATGCAGGAAGCAAATTGCCGCAgccatatcaaaatattcatttgGAATCTGGAGTTTCTCTTCTACAGTGCCAGATAGATGCATGGAATAGACAAGAGCATTCTGAAAAAATTGGTTTCCATTCAGTTGATATTGATGGTGATGATCCAAATGATGATACATGTGGTATATGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCATCAACGTTTCATCAGAGCTGCCTGGATATACAGATGCTTCCTCCTGGTGAATGGCATTGTCCAAATTGCACCTGTAAATTTTGTGGCATAGCCAGTGGAACTTCTGAAAAAGATGATGCATCTGTGTATGTCCTACGTACTTGCAACTTATGTGAGAAAAAATATCATGACACTTGCACTAAGGAGATGGATACCCTTCCTAATAACTTCAATACATCAAGCCTTTCTCTTTGTGGGAAAGAGTGCAAAGAGCTTTCTGAACACTTGAAGAAATACCTTGGTACCAAGCATGAACTAGAAGCGGGTTTTTCATGGTCTCTCATTCATAGAACAGATGAAGACTCAGAGGCAGCTTCCAGGGGAATTACTCAGAGGGTAGAATGCAATTCCAAGCTGGCTATTGCACTGACTGTGATGGATGAATGCTTTTTACCTGTTATTGATCGGAGGAGTGGGATCAATTTAATCCgtaatgttttatataatagtGGATCAAACTTTAGTCGGTTGAGCTATAGTGGCTTTTACACTGCTATTTTGGAGAGAGGGGATGAAATCATTGCTGCAGCATCTATCAGGTTCCATGGAACTAAGATAGCAGAGATGCCATTCATTGGAACTCGCCACATATATAGGCGCCAGGGGATGTGCCGCCGGATTTTTTCTGCCATTGAATCGGCCCTTTGCTATCTGAAGGTTGAAAAACTAGTTATTCCTGCAATTGCTGAACTCACACATACATGGACAACAGTTTTTGGCTTCACACATCTAGACGAATCACTCAGGCAAGAAATGAAGTCACTGAATATGATGGTCTTCCCTGGTATAGATATGTTACAGAAGCTGTTAGTGGAACAGGGAAAACATGAGGGTTCTgagaaaatggaaaatggaGACAACGATTTTATCATGACCAAAATGGGAAATAGGTCAGATGTGGGTTCTTCAACTCCACAAGATCCTCATGGAAATGACGATGTTAGTTCAAATCCTGCTAATGAGATGAATGATGAATGCAGCGATGCTTCTCAAGAACTAAACAACCATGTTTTGGATGATGGGACTCTTTGTTCCAAATCTCATTCTGAGGAAATGGTGTTTGATTCAGTTTCAGATATATGTGTTTCTCCTTCTAGAGGTAGTCACAATGCACTAGAAATGGAGAATAAAGTAGCGACTGCTTCTCCTGTTGATAAATTAAATCCTTCTGCCAAATGTCAATCCATTTCTCCGAATTACACTTCTGTGAGTAGTCACCCATTGGATATTCCGAAAGTTCAAGCTTTGGTTCAGGAAACTGCTTGTTCTAATCCATGTTCAGCAGAAAACCTTGACAAGAAATGTCACTCGTTCAGTGCTATGAATTGTGATTCATCGGAGCTTGACATTAATCCAGTGTTGGATTCTCAAATGGCAAACAATATTATACCTTATAAAGAGGTTTATATGGATGACACTCTTGAAACTGTTCCGTCAGGGAATTTATCTGAAGAGAATATTACAAAGGGGAATAATCAAAATGTAGATGTCTCCAGTTCTGCTCTCAATCATGCTGATGAGAGTTTGTTGCAAGTAGGATCTGATTCCAATGGTGAAATTGGATGTGAGAGCGAGAAGGATTTACATTTGAACCCAGGAGTTGCttcaaatgaaaagaattttgatgAAAGTGGCCTAAATGCTTCTGGTGATAGTTCCGAGACTGTTCTGGTCTAA 3861 0.4116 MESGVRSRGSGVVVKSRNSSGCLIVRKKGDGLGATASTSRKLYESKKRANINVSVSLSDSGSSDELLMPPGRRLGPETIRVCNGLAASERGGSEMSRKRDRVERIRGSGEGIAAEKGLEQRERKRNKLDVYDFDEYDGMDVENMRRRHLDGNGVGHGGGRFMGSVHAARSGIDREFKTGSSGRVLDHSRFKMNRDGTRLPLPSQREKFNSDESIRVQGKNGVLKVMVNKKVGGPSEHYDHHKPVESRQRLKTEETSKRLKTEETAKRLKTEETAKRNVPIRPSSYLETKPVGKPGLPKRLEKKRIASRKSLSSKDSKDDEGDSDNSDTSLNPGIRNSGARKPAKKIVPEDEQAPVHEKVPTTRMKEGKIKRGSGTEKQKLRERIREMLLSSGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYDALQKQLNDDANEAKPKGDSSSFAPIADEVLSQLTRKTRKKMEKELKKKKRYDSEKPQIRRSASNKRDMNSMVSDSDGEKLSTFIKQGSKSMKNKMFENTIISARSKIQNATHHSSDGKEKSLFGCDPHIHGRKSKKHGRCTLLVRSSNKGSNSESDGFVPYMGKRTVLSWLIDSGTVELSQKVQYRRRKKVLLEGWITRDGIHCGCCSKILTVSKFELHAGSKLPQPYQNIHLESGVSLLQCQIDAWNRQEHSEKIGFHSVDIDGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGEWHCPNCTCKFCGIASGTSEKDDASVYVLRTCNLCEKKYHDTCTKEMDTLPNNFNTSSLSLCGKECKELSEHLKKYLGTKHELEAGFSWSLIHRTDEDSEAASRGITQRVECNSKLAIALTVMDECFLPVIDRRSGINLIRNVLYNSGSNFSRLSYSGFYTAILERGDEIIAAASIRFHGTKIAEMPFIGTRHIYRRQGMCRRIFSAIESALCYLKVEKLVIPAIAELTHTWTTVFGFTHLDESLRQEMKSLNMMVFPGIDMLQKLLVEQGKHEGSEKMENGDNDFIMTKMGNRSDVGSSTPQDPHGNDDVSSNPANEMNDECSDASQELNNHVLDDGTLCSKSHSEEMVFDSVSDICVSPSRGSHNALEMENKVATASPVDKLNPSAKCQSISPNYTSVSSHPLDIPKVQALVQETACSNPCSAENLDKKCHSFSAMNCDSSELDINPVLDSQMANNIIPYKEVYMDDTLETVPSGNLSEENITKGNNQNVDVSSSALNHADESLLQVGSDSNGEIGCESEKDLHLNPGVASNEKNFDESGLNASGDSSETVLV 1286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3093 1286 MobiDBLite consensus disorder prediction 342 378 - -
Ssu2g3093 1286 MobiDBLite consensus disorder prediction 436 505 - -
Ssu2g3093 1286 MobiDBLite consensus disorder prediction 1024 1054 - -
Ssu2g3093 1286 MobiDBLite consensus disorder prediction 233 276 - -
Ssu2g3093 1286 SMART PHD_3 698 739 IPR001965 -
Ssu2g3093 1286 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1186 - -
Ssu2g3093 1286 ProSitePatterns Zinc finger PHD-type signature. 699 738 IPR019786 -
Ssu2g3093 1286 Pfam PHD-finger 699 741 IPR019787 -
Ssu2g3093 1286 ProSiteProfiles Zinc finger PHD-type profile. 696 741 IPR019787 -
Ssu2g3093 1286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 687 793 IPR013083 -
Ssu2g3093 1286 MobiDBLite consensus disorder prediction 1265 1286 - -
Ssu2g3093 1286 MobiDBLite consensus disorder prediction 489 505 - -
Ssu2g3093 1286 MobiDBLite consensus disorder prediction 231 378 - -
Ssu2g3093 1286 MobiDBLite consensus disorder prediction 294 324 - -
Ssu2g3093 1286 SUPERFAMILY FYVE/PHD zinc finger 684 741 IPR011011 -
Ssu2g3093 1286 MobiDBLite consensus disorder prediction 1020 1054 - -
Ssu2g3093 1286 MobiDBLite consensus disorder prediction 472 488 - -
Ssu2g3093 1286 PANTHER PHD FINGER FAMILY PROTEIN 1 1186 - -
Ssu2g3093 1286 MobiDBLite consensus disorder prediction 1240 1286 - -
Ssu2g3093 1286 Pfam Tify domain binding domain 621 671 IPR032308 -
Ssu2g3093 1286 CDD PHD2_CHD_II 699 738 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3093 Ssu-Chr2 92609372 92616661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3093 1 1014 PHD Transcription Factor Family AT4G14920 49.057 0.0 905
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu2g3093 TDBD 3.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3093 - - ccaj:109804483 2131.29