Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3072 ATGGACACGCCAGAGAGGAACCAGATCAGCGCTACCCTCTCTAAGTTTGAGGATTCACCTGTTTTCAACTATATCAATAGTTTGTCTCCTATAAAGCCCGTTAAGTCTGTTCCCATTAGTCAGACTTTCAATTCACTGAGCTTTTCGTCCCCTCCATCGGTGTTCACATCACCCCATGTCAGCTGTCTCAAGGAATCTAGATTCCTCCGGAGACATAACCCGTTGGGCACATCAAAGCCCAAAGTTTCTTCTGAAGATGTAAATAAAGTTCACTCAAGTGAAGAGACTCTTGCAGATTCTACACGTGCACATCATAACGCAAGTGAATTACAGGAAAACACTGATAAAGAGATTTCAGTGGGAGCTGCTTCAGTTGGGCTGTCTAGCGAGCACATAAAATTCTCAGTTGGGCTACAAGCTTTAAAATATAGTTGTGGTAGCCCTGGCTATGATCCTCCAATTTGTGGTCATGAGGCTAACTCTCTTTTGGATTTGCCTGGTGAGGCAGCAGCAGATGTTGGCTACGTTCAAGAAGGCTGTAAAACAGATTCAGCTGAGGGTGAAGTGCATCTTCAGGAAATACGTCAGATGGAGCCAAAGAGTGAAGGTCCAGACTGTTATTGGGATAGTTTAATTCCTGATGCACCTGatatgctaatttttaattccCCAGGTGAGGCAGAAGCTTTTAAGGGTCTAATGCACAAACCCTTGGATTCTTCTATACGACTGAGCGATTTTATGTCTCTGCTACCACATTCTACCATCAATAATGGTAGGAAAATGCACATTGTTGATTCAGTTGCTTCTGGTTCTGAACATGAAATTGAAGATCATTGTTCTGAGCCAATAACAACCACAGACACAGACCAAACACAGAATGTTACTTTGGTTACTAGCAATCCAAATGAGAAAGCAAATGACCAGCTTGTTTCTGTCACGCACCGTGCCATACGGAGGCGCTGTCTAGACTTTGAGATGGCCAATGTGCAAAGGAAGAACTCTGATGATAATTCAAATACCGGTTCTAGTACATCTGAGTCTGATGAGAGGAATGTTGCAAATGAAAAGCAACTGCTTCCTGCAAAACGAAGTGGGAATTTACAGAGGGGAATTTTGCCAGGAATTGGTCTACACTTGAATGCACTTGCTGCCCTAAAAGATTACAAGGGCatacaaattgaaaaattgtCTTTTGGAAGACAACTTAGTCTGCCCAGCTCTACTTCTTTGCAAATCTCTACAAGCCAGGAACATCAGCATCTATCACTGGTACCTGTATCATCTGAAAGCGAATTGGATCCCTCAGACAATGGGGTTCAGCCTGCTGAAGATTGTTCCCAGCCATCAGCTTACACGGCTGGTGAAGACTTCAACCAGAATAGCCCCAGAAAGAAAAGGCGTAAGTTGGAGACTCCCGGAGAAACTGAGGGCTGCAAACGCTGCAATTGCAAGAAATCAAAGTGTTTGAAGCTTTATTGTGAGTGCTTCGCTGCTGGTGTCTACTGCATAGAACCCTGCTCCTGTCAGGATTGCTTCAACAAACCTATTCATGAAGACACCGTTCTCCAAACTCGCAAGCAAATTGAATCTCGTAACCCTCTTGCATTTGCTCCTAAAGTCATCAGAAGTTCTGATTCTGTACCTGAAATTGGGGATGACCCAAATAAAACTCCAGCTTCAGCACGACACAAAAGAGGATGCAACTGCAAAAAATCAAGCTgcctaaaaaaatattgtgaatgtTATCAGGGTGGTGTTGGTTGCTCCATTAGCTGTAGATGTGAAGGGTGCAAGAATGCTTTCGGTAGAAAGGATGGTTCTGCTCCTGTAGGCATAGAAACTGAGCCAGAAGAAACAGAAGCATCTGACAAGGGTGTGGCAGAAAAAGCTTTACAGAAAACTGAAGATCATCCGGATTCTGCTACTGTGTCAACACCATTACGGCTTTCCAGACCATTGCTTCCGTTGCCCTTTTCATCAAAGGGAAAGCCACCAAGATCTTTTGTCACAACCATCTCAGGCTCTGCATTATTTGCCAGCCAAAAGCTTGGGAAACCAAATTCTCTTTGGTCTCAAGCTAAGCATTTTCAAACTGTTCCAGATGACGACATGCCGGATATTCTCCGAGGTGATAGCTCTCCTATCACGTGCATCAAAACTTCTTCTCCAAATGGCAAGAGGATCTCCTCTCCTAACTGTGACTTGGGATCATCTCCTAGTCGCAGAGGTGGCAGGAAGTTGATATTACAATCCATTCCTTCATTTCCTTCTCTCACCTCTCACCCTTAA 2292 0.4324 MDTPERNQISATLSKFEDSPVFNYINSLSPIKPVKSVPISQTFNSLSFSSPPSVFTSPHVSCLKESRFLRRHNPLGTSKPKVSSEDVNKVHSSEETLADSTRAHHNASELQENTDKEISVGAASVGLSSEHIKFSVGLQALKYSCGSPGYDPPICGHEANSLLDLPGEAAADVGYVQEGCKTDSAEGEVHLQEIRQMEPKSEGPDCYWDSLIPDAPDMLIFNSPGEAEAFKGLMHKPLDSSIRLSDFMSLLPHSTINNGRKMHIVDSVASGSEHEIEDHCSEPITTTDTDQTQNVTLVTSNPNEKANDQLVSVTHRAIRRRCLDFEMANVQRKNSDDNSNTGSSTSESDERNVANEKQLLPAKRSGNLQRGILPGIGLHLNALAALKDYKGIQIEKLSFGRQLSLPSSTSLQISTSQEHQHLSLVPVSSESELDPSDNGVQPAEDCSQPSAYTAGEDFNQNSPRKKRRKLETPGETEGCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKPIHEDTVLQTRKQIESRNPLAFAPKVIRSSDSVPEIGDDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNAFGRKDGSAPVGIETEPEETEASDKGVAEKALQKTEDHPDSATVSTPLRLSRPLLPLPFSSKGKPPRSFVTTISGSALFASQKLGKPNSLWSQAKHFQTVPDDDMPDILRGDSSPITCIKTSSPNGKRISSPNCDLGSSPSRRGGRKLILQSIPSFPSLTSHP 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3072 763 MobiDBLite consensus disorder prediction 329 362 - -
Ssu2g3072 763 MobiDBLite consensus disorder prediction 84 112 - -
Ssu2g3072 763 MobiDBLite consensus disorder prediction 332 349 - -
Ssu2g3072 763 MobiDBLite consensus disorder prediction 717 763 - -
Ssu2g3072 763 MobiDBLite consensus disorder prediction 269 292 - -
Ssu2g3072 763 MobiDBLite consensus disorder prediction 421 479 - -
Ssu2g3072 763 MobiDBLite consensus disorder prediction 421 459 - -
Ssu2g3072 763 MobiDBLite consensus disorder prediction 73 113 - -
Ssu2g3072 763 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 761 IPR044522 GO:0003700
Ssu2g3072 763 MobiDBLite consensus disorder prediction 269 284 - -
Ssu2g3072 763 SMART CXC_2 563 604 IPR033467 -
Ssu2g3072 763 SMART CXC_2 477 518 IPR033467 -
Ssu2g3072 763 MobiDBLite consensus disorder prediction 717 738 - -
Ssu2g3072 763 MobiDBLite consensus disorder prediction 460 479 - -
Ssu2g3072 763 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 480 515 IPR005172 -
Ssu2g3072 763 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 566 601 IPR005172 -
Ssu2g3072 763 ProSiteProfiles CRC domain profile. 478 603 IPR005172 -
Ssu2g3072 763 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 761 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3072 Ssu-Chr2 92412049 92417071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3072 16 760 CPP Transcription Factor Family AT4G14770 44.850 5.31e-160 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Ssu2g3072 TCR 1.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3072 - - gmx:100804447 1355.12