Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3062 ATGAGTACTGTCGGATACAGGTCAGATGAGGAATGCTCTGTCATTGGAGAAAAGGCAGAAATTGGGTTTCTAGATTTTGAGGAAGAAAAATCTGTTTGCAGTTACGTTGGTAATGAAGGGGCTCCAATTATTGTATCTGTCCCATTTGCATTTGTGGATGGCAAGCCTCGATCTGTAATTGTAGGAGATACTGCCGTGGATTTAATAACCATTAAGAATACTACTGATGAACCTGTGGACCTGTGGAGTGTTAATATTTTCGCCTCAAATCCTCAGGACACTTTCACTCTTTCTCTCACAGAACCACCATCAGCAAATTCAAATGCAGATGGAGATCAGAgctttttagaatatttctctTTGGAGGACAGGGTGCTTCAGCCTGGCGAGATCTTAAAAATATGGTTGTCTTGCAAGACAAAGGATATGGGCATGTATTCATCAGTTGTTTATTTTGATGTTGGAGATGAAAAAGTCGAAAGGGTGGTTTTCCTCTTAGTTGAAGACAAAATCTCCAAGTCTTTGGCTTCTAATAGGCCTTATTCAAGaggaaggagaaaagagaaatttgtTGTAGATACTTTTGTTAAGGGTTCACGTCCTGCGGGAAAGCCAACTCGAAGATACATAAATAGGCTTCCAAAATATGACATTCCCAGGGACATTAGAGAGTTGCTTGAGAGCAATCAGGTCCCTCAAGTTGTTGAAGAAGGTCTTACAAGAAGGACTTATGCTTCTTATTTccaaacattaataataatggaAGAGATACAATTGGAGGAAGACATGAGGACCTATGACATGGAATGCATATCTATGAGAAAGAGAACCAATCATTTCTTGACTTTGGTGGTTCCTGGGCTTGCTGAGAGAAGGCCCTCGCTGGTTCATGGGGATTATATCTTTGTCAAGCTCACATCTGAACGCGATAATAACACCACACCCGTTTATCAGGGATATATCCACAGAGTTGAAGCTGATGAGGTCTATTTGAAGTTTGATCCTGAATTTCACTTTTACCATAGGGATGAAAATTGCTATGATGTTCACTTCACATATAACAGGATCAATATGAGAAGGTTGTATCAAGCAGTTGAGGCAGCAGAAAACTTAGGAACTGAGTTCCTTTTTCCATCTTTGATATCCAGAAAGAGGCACATCAAAACCACTGCTCTGGTTCCCATATCTGGTACTTTTAACGAGGAGCAAATTTGTTCAATCAAAATGATTCTTGGTTGCAAAGGTGCACCGCCTTATGTGATTCATGGGCCCCCAGGTACAGGAAAGACAAGGACAATAGTAGAAGCAATCCTCCAGCTATACAAATATCATAAGAATGCTCGTATTCTTGTCTGTGCGCCTTCAAATAGTGCAGCAGACTACATACTGGAGAAACTCCTTGCTCAACAGGATGTTGAATTTCgagaaaatgaaatattcaGGCTCAATGCATCTACCAGGCCATATGAGGATGTCAAACCTGAAGTCATCCGCTTCTGCTTCTTTGATGATATGGTATTTAAGTGTCCCCCATTCAGTGCCCTCTTTCATTACAGGATCATAATATCCACATATATGAGTGCCTCTCTTCTTTATGCTGAAGATGTTGCCCGCGGTCACTTCTCTCACATTTTCTTGGATGAGGCTGGCCAGGCTTCAGAACCTGAAACCATGATCCCTGTATCCCACCTCTGCACAAGGGATACTGTAGTTGTTCTGGCTGGAGACCAATTGCAGTTGGGTCCAGTAATATATTCCAAGAAAGCAGATGAGTATGGGTTGGGGGTTTCATACATGGAAAGATTGTCTGAATGTGAGTTTTATGCGAGTGGAGATGCAAATTATGTAACAAGATTGATTAGGAACTATCGATGTCACCCAGAGATTTTATATCTCCCTTCAAAGCTGTTCTATGATGGGGAATTGATTGCCTGTAGAGATTCCACAACTTTCATGGTCATTGGGGAGTTGCTTCCTAATAAGGAGTTCCCTATTCTTTTCTATGGCATCCAAGGATGTGATGAAAGAGAAGGGAATAATCCATCATGGTTCAACCGAATTGAAGCAAGTAAGGTTATAGAAGTTGTCAGGAAACTGATAGCCGGTGGGAATATAAAGGAGGAAAACATTGGCATAATAACTCCATATAGGCAACAAGTGCTGAAAATAAAACAGACTCTTGAAAATCTAGATATGCCTGAAATCAAAGTGGGTAGTGTTGAGCAATTTCAAGGACAAGAGAAGGAGGTTATTATCGTATCAACTGTTCGATCTACCATCAAACACAATGAGTTTGACCGAGTCCACTGTCTTGGCTTTTTGAGCAATTATAGAAGGTTTAATGTGGCTATAACCCGTGCCATATCATTACTGGTTATAATTGGGAATCCGCATATTATCTGCAAGGATGATAATTGGAGCCAAATGTTGTGGCACTGTGTGGACAATTCATCTTATCAGGGTTGTTCTCTTCCTGAAAGGGTCGAACTTTATGACGATGATGACACTGGAGAGAACTCTTGTTTTACCGAAGATAATGGGTTGCCCTCCGACAATGTAGAATGGGGTCAAGACAATGGAGAATGGGGTCAAGATTCATCCCAGCTAGAGTTGCCTAAACCTGTTACCGATGAAGCTGAATGGTCTGATGGCTGGAGAAGTAATTAA 2667 0.4016 MSTVGYRSDEECSVIGEKAEIGFLDFEEEKSVCSYVGNEGAPIIVSVPFAFVDGKPRSVIVGDTAVDLITIKNTTDEPVDLWSVNIFASNPQDTFTLSLTEPPSANSNADGDQSFLEYFSLEDRVLQPGEILKIWLSCKTKDMGMYSSVVYFDVGDEKVERVVFLLVEDKISKSLASNRPYSRGRRKEKFVVDTFVKGSRPAGKPTRRYINRLPKYDIPRDIRELLESNQVPQVVEEGLTRRTYASYFQTLIIMEEIQLEEDMRTYDMECISMRKRTNHFLTLVVPGLAERRPSLVHGDYIFVKLTSERDNNTTPVYQGYIHRVEADEVYLKFDPEFHFYHRDENCYDVHFTYNRINMRRLYQAVEAAENLGTEFLFPSLISRKRHIKTTALVPISGTFNEEQICSIKMILGCKGAPPYVIHGPPGTGKTRTIVEAILQLYKYHKNARILVCAPSNSAADYILEKLLAQQDVEFRENEIFRLNASTRPYEDVKPEVIRFCFFDDMVFKCPPFSALFHYRIIISTYMSASLLYAEDVARGHFSHIFLDEAGQASEPETMIPVSHLCTRDTVVVLAGDQLQLGPVIYSKKADEYGLGVSYMERLSECEFYASGDANYVTRLIRNYRCHPEILYLPSKLFYDGELIACRDSTTFMVIGELLPNKEFPILFYGIQGCDEREGNNPSWFNRIEASKVIEVVRKLIAGGNIKEENIGIITPYRQQVLKIKQTLENLDMPEIKVGSVEQFQGQEKEVIIVSTVRSTIKHNEFDRVHCLGFLSNYRRFNVAITRAISLLVIIGNPHIICKDDNWSQMLWHCVDNSSYQGCSLPERVELYDDDDTGENSCFTEDNGLPSDNVEWGQDNGEWGQDSSQLELPKPVTDEAEWSDGWRSN 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3062 888 MobiDBLite consensus disorder prediction 841 871 - -
Ssu2g3062 888 Gene3D - 624 824 IPR027417 -
Ssu2g3062 888 PANTHER DNA2/NAM7 HELICASE FAMILY 8 841 IPR045055 -
Ssu2g3062 888 Gene3D - 327 610 IPR027417 -
Ssu2g3062 888 Pfam AAA domain 595 797 IPR041679 -
Ssu2g3062 888 CDD DEXXQc_Helz-like 400 624 - -
Ssu2g3062 888 PANTHER RNA HELICASE SDE3-RELATED 8 841 - -
Ssu2g3062 888 Pfam AAA domain 515 587 IPR041677 GO:0004386
Ssu2g3062 888 Pfam AAA domain 399 494 IPR041677 GO:0004386
Ssu2g3062 888 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 398 807 IPR027417 -
Ssu2g3062 888 MobiDBLite consensus disorder prediction 835 888 - -
Ssu2g3062 888 CDD SF1_C_Upf1 625 813 IPR041679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3062 Ssu-Chr2 92273317 92302472 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3062 398 555 Core DNA Replication Machinery Family AT1G08840 29.193 6.55e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3062 K18422 - gmx:100801796 1635.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g3062 2 92273317 92302472 Ssu2g3062 2 92273317 92302472 ECH